R-BSgenome |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome-SPECPARTS |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome_1.64.0.tar.gz |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/R-BSgenome.spec |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/sources |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/DESCRIPTION |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/NAMESPACE |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/NEWS |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/README.md |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/TODO |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/build |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/build/vignette.rds |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/doc |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/doc/BSgenomeForge.pdf |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/doc/BSgenomeForge.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/doc/BSgenomeForge.Rnw |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/doc/GenomeSearching.pdf |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/doc/GenomeSearching.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/doc/GenomeSearching.Rnw |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/ce2chrM.fa.gz |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/ce2chrX.fa.gz |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/ce2dict0.fa |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.NCBI.AmelHAv3.1-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.04232008-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau8-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce10-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce11-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce2-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce6-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac4-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Creinhardtii.JGI.v5.6-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm6-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer11-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Dvirilis.Ensembl.dvircaf1-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ecoli.NCBI.20080805-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal6-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.influenza.NCBI.20100628-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.6.0-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfuro.UCSC.musFur1-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac10-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm39-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ppaniscus.UCSC.panPan1-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ppaniscus.UCSC.panPan2-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro5-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro6-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn6-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn7-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer1-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer2-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer3-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr11-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1.masked-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-seed |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/bump_seed_version.sh |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/ForgeAll.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/NOTES.TXT |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/splitbigfasta.sh |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.NCBI.AmelHAv3.1-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.NCBI.AmelHAv3.1-tools/fasta_to_sorted_2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-tools/splitbigfasta.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/NOTES.TXT |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools/splitbigfasta.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9-tools/sort_bosTau9.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools/splitbigfasta.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-tools/sort_calJac3.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Creinhardtii.JGI.v5.6-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Creinhardtii.JGI.v5.6-tools/CITATION |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Creinhardtii.JGI.v5.6-tools/fasta_to_2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-tools/sort_danRer10.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer11-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer11-tools/sort_danRer11.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/NOTES.TXT |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/splitbigfasta.sh |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/NOTES.TXT |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/splitbigfasta.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/NOTES.TXT |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/splitbigfasta.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-tools/splitbigfasta.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-tools/sort_galGal5.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal6-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal6-tools/sort_galGal6.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-tools/fasta_to_sorted_2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools/splitbigfasta.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0-tools/fasta_to_sorted_2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-tools/sort_monDom5.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools/fasta_to_sorted2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.6.0-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.6.0-tools/fasta_to_sorted_2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac10-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac10-tools/sort_rheMac10.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools/splitbigfasta.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-tools/sort_rheMac8.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools/splitbigfasta.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro5-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro5-tools/sort_panTro5.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro6-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro6-tools/sort_panTro6.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools/splitbigfasta.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr11-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr11-tools/sort_susScr11.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-tools/splitbigfasta.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-tools |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-tools/sort_taeGut2.2bit.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/BSgenome_datapkg |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/BSgenome_datapkg/DESCRIPTION |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/BSgenome_datapkg/NAMESPACE |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/BSgenome_datapkg/man |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/BSgenome_datapkg/man/package.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/BSgenome_datapkg/R |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/BSgenome_datapkg/R/zzz.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/DESCRIPTION |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/NAMESPACE |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/man |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/man/package.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/R |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/R/zzz.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man/available.genomes.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man/bsapply.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man/BSgenome-class.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man/BSgenome-utils.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man/BSgenomeForge.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man/BSgenomeViews-class.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man/BSParams-class.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man/export-methods.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man/getSeq-methods.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man/injectSNPs.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man/SNPlocs-class.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/man/XtraSNPlocs-class.Rd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/available.genomes.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/bsapply.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/BSgenome-class.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/BSgenome-utils.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/BSgenomeForge.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/BSgenomeViews-class.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/export-methods.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/extractAt-methods.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/getSeq-methods.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/injectSNPs.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/InjectSNPsHandler-class.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/ODLT_SNPlocs-class.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/OldFashionSNPlocs-class.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/OnDiskLongTable-class.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/OnDiskLongTable_old-class.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/OnDiskNamedSequences-class.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/SNPlocs-class.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/utils.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/R/XtraSNPlocs-class.R |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/vignettes |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/vignettes/BSgenomeForge.Rnw |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
R-BSgenome/BSgenome/BSgenome/vignettes/GenomeSearching.Rnw |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|