Copyrights and Licenses Information

path	start	end	what	value
R-Biostrings/R-Biostrings.spec	9	9	license	artistic-2.0
R-Biostrings/Biostrings/Biostrings/DESCRIPTION	11	11	license	artistic-2.0
R-Biostrings/Biostrings/Biostrings/NEWS	366	366	license	lgpl-2.0-plus
R-Biostrings/Biostrings/Biostrings/NEWS	366	366	license	artistic-2.0

File Information

path	type	name	extension	date	size	sha1	md5	files_count	mime_type	file_type	programming_language	is_binary	is_text	is_archive	is_media	is_source	is_script
R-Biostrings	directory
R-Biostrings/Biostrings-SPECPARTS	directory
R-Biostrings/Biostrings_2.64.1.tar.gz	file
R-Biostrings/R-Biostrings-no-zlibbioc.patch	file
R-Biostrings/R-Biostrings.spec	file
R-Biostrings/sources	file
R-Biostrings/Biostrings	directory
R-Biostrings/Biostrings/Biostrings	directory
R-Biostrings/Biostrings/Biostrings/CHANGES	file
R-Biostrings/Biostrings/Biostrings/DESCRIPTION	file
R-Biostrings/Biostrings/Biostrings/NAMESPACE	file
R-Biostrings/Biostrings/Biostrings/NEWS	file
R-Biostrings/Biostrings/Biostrings/README.md	file
R-Biostrings/Biostrings/Biostrings/TODO	file
R-Biostrings/Biostrings/Biostrings/build	directory
R-Biostrings/Biostrings/Biostrings/build/vignette.rds	file
R-Biostrings/Biostrings/Biostrings/data	directory
R-Biostrings/Biostrings/Biostrings/data/BLOSUM100.rda	file
R-Biostrings/Biostrings/Biostrings/data/BLOSUM45.rda	file
R-Biostrings/Biostrings/Biostrings/data/BLOSUM50.rda	file
R-Biostrings/Biostrings/Biostrings/data/BLOSUM62.rda	file
R-Biostrings/Biostrings/Biostrings/data/BLOSUM80.rda	file
R-Biostrings/Biostrings/Biostrings/data/HNF4alpha.rda	file
R-Biostrings/Biostrings/Biostrings/data/PAM120.rda	file
R-Biostrings/Biostrings/Biostrings/data/PAM250.rda	file
R-Biostrings/Biostrings/Biostrings/data/PAM30.rda	file
R-Biostrings/Biostrings/Biostrings/data/PAM40.rda	file
R-Biostrings/Biostrings/Biostrings/data/PAM70.rda	file
R-Biostrings/Biostrings/Biostrings/data/phiX174Phage.rda	file
R-Biostrings/Biostrings/Biostrings/data/srPhiX174.rda	file
R-Biostrings/Biostrings/Biostrings/data/yeastSEQCHR1.rda	file
R-Biostrings/Biostrings/Biostrings/devtools	directory
R-Biostrings/Biostrings/Biostrings/devtools/rgrep-tip.txt	file
R-Biostrings/Biostrings/Biostrings/inst	directory
R-Biostrings/Biostrings/Biostrings/inst/doc	directory
R-Biostrings/Biostrings/Biostrings/inst/doc/Biostrings2Classes.pdf	file
R-Biostrings/Biostrings/Biostrings/inst/doc/Biostrings2Classes.R	file
R-Biostrings/Biostrings/Biostrings/inst/doc/Biostrings2Classes.Rnw	file
R-Biostrings/Biostrings/Biostrings/inst/doc/BiostringsQuickOverview.pdf	file
R-Biostrings/Biostrings/Biostrings/inst/doc/BiostringsQuickOverview.Rnw	file
R-Biostrings/Biostrings/Biostrings/inst/doc/matchprobes.pdf	file
R-Biostrings/Biostrings/Biostrings/inst/doc/matchprobes.R	file
R-Biostrings/Biostrings/Biostrings/inst/doc/matchprobes.Rnw	file
R-Biostrings/Biostrings/Biostrings/inst/doc/MultipleAlignments.pdf	file
R-Biostrings/Biostrings/Biostrings/inst/doc/MultipleAlignments.R	file
R-Biostrings/Biostrings/Biostrings/inst/doc/MultipleAlignments.Rnw	file
R-Biostrings/Biostrings/Biostrings/inst/doc/PairwiseAlignments.pdf	file
R-Biostrings/Biostrings/Biostrings/inst/doc/PairwiseAlignments.R	file
R-Biostrings/Biostrings/Biostrings/inst/doc/PairwiseAlignments.Rnw	file
R-Biostrings/Biostrings/Biostrings/inst/extdata	directory
R-Biostrings/Biostrings/Biostrings/inst/extdata/dm3_upstream2000.fa.gz	file
R-Biostrings/Biostrings/Biostrings/inst/extdata/fastaEx.fa	file
R-Biostrings/Biostrings/Biostrings/inst/extdata/hg18chr8_gap.txt	file
R-Biostrings/Biostrings/Biostrings/inst/extdata/hg18chrY_gap.txt	file
R-Biostrings/Biostrings/Biostrings/inst/extdata/msx2_mRNA.aln	file
R-Biostrings/Biostrings/Biostrings/inst/extdata/Phylip.txt	file
R-Biostrings/Biostrings/Biostrings/inst/extdata/README	file
R-Biostrings/Biostrings/Biostrings/inst/extdata/s_1_sequence.txt	file
R-Biostrings/Biostrings/Biostrings/inst/extdata/Sc.fa	file
R-Biostrings/Biostrings/Biostrings/inst/extdata/someORF.fa	file
R-Biostrings/Biostrings/Biostrings/inst/extdata/someORF.fa.gz	file
R-Biostrings/Biostrings/Biostrings/inst/extdata/Sp.fa	file
R-Biostrings/Biostrings/Biostrings/inst/include	directory
R-Biostrings/Biostrings/Biostrings/inst/include/_Biostrings_stubs.c	file
R-Biostrings/Biostrings/Biostrings/inst/include/Biostrings_defines.h	file
R-Biostrings/Biostrings/Biostrings/inst/include/Biostrings_interface.h	file
R-Biostrings/Biostrings/Biostrings/inst/unitTests	directory
R-Biostrings/Biostrings/Biostrings/inst/unitTests/test_findPalindromes.R	file
R-Biostrings/Biostrings/Biostrings/inst/unitTests/test_matchDNAPattern.R.FIXME	file
R-Biostrings/Biostrings/Biostrings/inst/unitTests/test_matchPDict.R	file
R-Biostrings/Biostrings/Biostrings/inst/unitTests/test_MultipleAlignment.R	file
R-Biostrings/Biostrings/Biostrings/inst/unitTests/test_pairwiseAlignment.R	file
R-Biostrings/Biostrings/Biostrings/inst/unitTests/test_seqinfo.R	file
R-Biostrings/Biostrings/Biostrings/inst/unitTests/test_twoWayAlphabetFrequency.R	file
R-Biostrings/Biostrings/Biostrings/inst/unitTests/test_XString.R	file
R-Biostrings/Biostrings/Biostrings/inst/unitTests/test_XStringSet-io.R	file
R-Biostrings/Biostrings/Biostrings/inst/unitTests/test_XStringSet.R	file
R-Biostrings/Biostrings/Biostrings/inst/unitTests/test_XStringSetList.R	file
R-Biostrings/Biostrings/Biostrings/man	directory
R-Biostrings/Biostrings/Biostrings/man/AAString-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/align-utils.Rd	file
R-Biostrings/Biostrings/Biostrings/man/AlignedXStringSet-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/AMINO_ACID_CODE.Rd	file
R-Biostrings/Biostrings/Biostrings/man/Biostrings-internals.Rd	file
R-Biostrings/Biostrings/Biostrings/man/chartr.Rd	file
R-Biostrings/Biostrings/Biostrings/man/detail.Rd	file
R-Biostrings/Biostrings/Biostrings/man/dinucleotideFrequencyTest.Rd	file
R-Biostrings/Biostrings/Biostrings/man/DNAString-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/findPalindromes.Rd	file
R-Biostrings/Biostrings/Biostrings/man/GENETIC_CODE.Rd	file
R-Biostrings/Biostrings/Biostrings/man/getSeq.Rd	file
R-Biostrings/Biostrings/Biostrings/man/gregexpr2.Rd	file
R-Biostrings/Biostrings/Biostrings/man/HNF4alpha.Rd	file
R-Biostrings/Biostrings/Biostrings/man/InDel-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/injectHardMask.Rd	file
R-Biostrings/Biostrings/Biostrings/man/IUPAC_CODE_MAP.Rd	file
R-Biostrings/Biostrings/Biostrings/man/letter.Rd	file
R-Biostrings/Biostrings/Biostrings/man/letterFrequency.Rd	file
R-Biostrings/Biostrings/Biostrings/man/longestConsecutive.Rd	file
R-Biostrings/Biostrings/Biostrings/man/lowlevel-matching.Rd	file
R-Biostrings/Biostrings/Biostrings/man/MaskedXString-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/maskMotif.Rd	file
R-Biostrings/Biostrings/Biostrings/man/match-utils.Rd	file
R-Biostrings/Biostrings/Biostrings/man/matchLRPatterns.Rd	file
R-Biostrings/Biostrings/Biostrings/man/matchPattern.Rd	file
R-Biostrings/Biostrings/Biostrings/man/matchPDict-exact.Rd	file
R-Biostrings/Biostrings/Biostrings/man/matchPDict-inexact.Rd	file
R-Biostrings/Biostrings/Biostrings/man/matchProbePair.Rd	file
R-Biostrings/Biostrings/Biostrings/man/matchprobes.Rd	file
R-Biostrings/Biostrings/Biostrings/man/matchPWM.Rd	file
R-Biostrings/Biostrings/Biostrings/man/MIndex-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/misc.Rd	file
R-Biostrings/Biostrings/Biostrings/man/MultipleAlignment-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/needwunsQS.Rd	file
R-Biostrings/Biostrings/Biostrings/man/nucleotideFrequency.Rd	file
R-Biostrings/Biostrings/Biostrings/man/padAndClip.Rd	file
R-Biostrings/Biostrings/Biostrings/man/pairwiseAlignment.Rd	file
R-Biostrings/Biostrings/Biostrings/man/PairwiseAlignments-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/PairwiseAlignments-io.Rd	file
R-Biostrings/Biostrings/Biostrings/man/PDict-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/phiX174Phage.Rd	file
R-Biostrings/Biostrings/Biostrings/man/pid.Rd	file
R-Biostrings/Biostrings/Biostrings/man/pmatchPattern.Rd	file
R-Biostrings/Biostrings/Biostrings/man/QualityScaledXStringSet-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/replaceAt.Rd	file
R-Biostrings/Biostrings/Biostrings/man/replaceLetterAt.Rd	file
R-Biostrings/Biostrings/Biostrings/man/reverseComplement.Rd	file
R-Biostrings/Biostrings/Biostrings/man/RNAString-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/seqinfo.Rd	file
R-Biostrings/Biostrings/Biostrings/man/stringDist.Rd	file
R-Biostrings/Biostrings/Biostrings/man/substitution_matrices.Rd	file
R-Biostrings/Biostrings/Biostrings/man/toComplex.Rd	file
R-Biostrings/Biostrings/Biostrings/man/translate.Rd	file
R-Biostrings/Biostrings/Biostrings/man/trimLRPatterns.Rd	file
R-Biostrings/Biostrings/Biostrings/man/xscat.Rd	file
R-Biostrings/Biostrings/Biostrings/man/XString-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/XStringPartialMatches-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/XStringQuality-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/XStringSet-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/XStringSet-comparison.Rd	file
R-Biostrings/Biostrings/Biostrings/man/XStringSet-io.Rd	file
R-Biostrings/Biostrings/Biostrings/man/XStringSetList-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/XStringViews-class.Rd	file
R-Biostrings/Biostrings/Biostrings/man/yeastSEQCHR1.Rd	file
R-Biostrings/Biostrings/Biostrings/R	directory
R-Biostrings/Biostrings/Biostrings/R/00datacache.R	file
R-Biostrings/Biostrings/Biostrings/R/align-utils.R	file
R-Biostrings/Biostrings/Biostrings/R/AlignedXStringSet-class.R	file
R-Biostrings/Biostrings/Biostrings/R/AMINO_ACID_CODE.R	file
R-Biostrings/Biostrings/Biostrings/R/chartr.R	file
R-Biostrings/Biostrings/Biostrings/R/coloring.R	file
R-Biostrings/Biostrings/Biostrings/R/dinucleotideFrequencyTest.R	file
R-Biostrings/Biostrings/Biostrings/R/findPalindromes.R	file
R-Biostrings/Biostrings/Biostrings/R/GENETIC_CODE.R	file
R-Biostrings/Biostrings/Biostrings/R/getSeq.R	file
R-Biostrings/Biostrings/Biostrings/R/InDel-class.R	file
R-Biostrings/Biostrings/Biostrings/R/injectHardMask.R	file
R-Biostrings/Biostrings/Biostrings/R/IUPAC_CODE_MAP.R	file
R-Biostrings/Biostrings/Biostrings/R/letter.R	file
R-Biostrings/Biostrings/Biostrings/R/letterFrequency.R	file
R-Biostrings/Biostrings/Biostrings/R/lowlevel-matching.R	file
R-Biostrings/Biostrings/Biostrings/R/MaskedXString-class.R	file
R-Biostrings/Biostrings/Biostrings/R/maskMotif.R	file
R-Biostrings/Biostrings/Biostrings/R/match-utils.R	file
R-Biostrings/Biostrings/Biostrings/R/matchLRPatterns.R	file
R-Biostrings/Biostrings/Biostrings/R/matchPattern.R	file
R-Biostrings/Biostrings/Biostrings/R/matchPDict.R	file
R-Biostrings/Biostrings/Biostrings/R/matchProbePair.R	file
R-Biostrings/Biostrings/Biostrings/R/matchprobes.R	file
R-Biostrings/Biostrings/Biostrings/R/matchPWM.R	file
R-Biostrings/Biostrings/Biostrings/R/MIndex-class.R	file
R-Biostrings/Biostrings/Biostrings/R/misc.R	file
R-Biostrings/Biostrings/Biostrings/R/MultipleAlignment.R	file
R-Biostrings/Biostrings/Biostrings/R/needwunsQS.R	file
R-Biostrings/Biostrings/Biostrings/R/padAndClip.R	file
R-Biostrings/Biostrings/Biostrings/R/pairwiseAlignment.R	file
R-Biostrings/Biostrings/Biostrings/R/PairwiseAlignments-class.R	file
R-Biostrings/Biostrings/Biostrings/R/PairwiseAlignments-io.R	file
R-Biostrings/Biostrings/Biostrings/R/PairwiseAlignmentsSingleSubject-class.R	file
R-Biostrings/Biostrings/Biostrings/R/PDict-class.R	file
R-Biostrings/Biostrings/Biostrings/R/pmatchPattern.R	file
R-Biostrings/Biostrings/Biostrings/R/QualityScaledXStringSet.R	file
R-Biostrings/Biostrings/Biostrings/R/replaceAt.R	file
R-Biostrings/Biostrings/Biostrings/R/replaceLetterAt.R	file
R-Biostrings/Biostrings/Biostrings/R/reverseComplement.R	file
R-Biostrings/Biostrings/Biostrings/R/seqinfo.R	file
R-Biostrings/Biostrings/Biostrings/R/seqtype.R	file
R-Biostrings/Biostrings/Biostrings/R/SparseList-class.R	file
R-Biostrings/Biostrings/Biostrings/R/stringDist.R	file
R-Biostrings/Biostrings/Biostrings/R/strsplit-methods.R	file
R-Biostrings/Biostrings/Biostrings/R/toComplex.R	file
R-Biostrings/Biostrings/Biostrings/R/translate.R	file
R-Biostrings/Biostrings/Biostrings/R/trimLRPatterns.R	file
R-Biostrings/Biostrings/Biostrings/R/utils.R	file
R-Biostrings/Biostrings/Biostrings/R/xscat.R	file
R-Biostrings/Biostrings/Biostrings/R/XString-class.R	file
R-Biostrings/Biostrings/Biostrings/R/XStringCodec-class.R	file
R-Biostrings/Biostrings/Biostrings/R/XStringPartialMatches-class.R	file
R-Biostrings/Biostrings/Biostrings/R/XStringQuality-class.R	file
R-Biostrings/Biostrings/Biostrings/R/XStringSet-class.R	file
R-Biostrings/Biostrings/Biostrings/R/XStringSet-comparison.R	file
R-Biostrings/Biostrings/Biostrings/R/XStringSet-io.R	file
R-Biostrings/Biostrings/Biostrings/R/XStringSetList-class.R	file
R-Biostrings/Biostrings/Biostrings/R/XStringViews-class.R	file
R-Biostrings/Biostrings/Biostrings/R/zzz.R	file
R-Biostrings/Biostrings/Biostrings/src	directory
R-Biostrings/Biostrings/Biostrings/src/align_needwunsQS.c	file
R-Biostrings/Biostrings/Biostrings/src/align_pairwiseAlignment.c	file
R-Biostrings/Biostrings/Biostrings/src/align_utils.c	file
R-Biostrings/Biostrings/Biostrings/src/BAB_class.c	file
R-Biostrings/Biostrings/Biostrings/src/Biostrings.h	file
R-Biostrings/Biostrings/Biostrings/src/BitMatrix.c	file
R-Biostrings/Biostrings/Biostrings/src/find_palindromes.c	file
R-Biostrings/Biostrings/Biostrings/src/gtestsim.c	file
R-Biostrings/Biostrings/Biostrings/src/inject_code.c	file
R-Biostrings/Biostrings/Biostrings/src/IRanges_stubs.c	file
R-Biostrings/Biostrings/Biostrings/src/letter_frequency.c	file
R-Biostrings/Biostrings/Biostrings/src/lowlevel_matching.c	file
R-Biostrings/Biostrings/Biostrings/src/match_pattern.c	file
R-Biostrings/Biostrings/Biostrings/src/match_pattern_boyermoore.c	file
R-Biostrings/Biostrings/Biostrings/src/match_pattern_indels.c	file
R-Biostrings/Biostrings/Biostrings/src/match_pattern_shiftor.c	file
R-Biostrings/Biostrings/Biostrings/src/match_pdict.c	file
R-Biostrings/Biostrings/Biostrings/src/match_pdict_ACtree2.c	file
R-Biostrings/Biostrings/Biostrings/src/match_pdict_Twobit.c	file
R-Biostrings/Biostrings/Biostrings/src/match_pdict_utils.c	file
R-Biostrings/Biostrings/Biostrings/src/match_PWM.c	file
R-Biostrings/Biostrings/Biostrings/src/match_reporting.c	file
R-Biostrings/Biostrings/Biostrings/src/matchprobes.c	file
R-Biostrings/Biostrings/Biostrings/src/MIndex_class.c	file
R-Biostrings/Biostrings/Biostrings/src/pmatchPattern.c	file
R-Biostrings/Biostrings/Biostrings/src/PreprocessedTB_class.c	file
R-Biostrings/Biostrings/Biostrings/src/R_init_Biostrings.c	file
R-Biostrings/Biostrings/Biostrings/src/read_fasta_files.c	file
R-Biostrings/Biostrings/Biostrings/src/read_fastq_files.c	file
R-Biostrings/Biostrings/Biostrings/src/replace_letter_at.c	file
R-Biostrings/Biostrings/Biostrings/src/replaceAt.c	file
R-Biostrings/Biostrings/Biostrings/src/RoSeqs_utils.c	file
R-Biostrings/Biostrings/Biostrings/src/S4Vectors_stubs.c	file
R-Biostrings/Biostrings/Biostrings/src/SparseList_utils.c	file
R-Biostrings/Biostrings/Biostrings/src/strutils.c	file
R-Biostrings/Biostrings/Biostrings/src/translate.c	file
R-Biostrings/Biostrings/Biostrings/src/unstrsplit_methods.c	file
R-Biostrings/Biostrings/Biostrings/src/utils.c	file
R-Biostrings/Biostrings/Biostrings/src/xscat.c	file
R-Biostrings/Biostrings/Biostrings/src/XString_class.c	file
R-Biostrings/Biostrings/Biostrings/src/XStringSet_class.c	file
R-Biostrings/Biostrings/Biostrings/src/XStringSetList_class.c	file
R-Biostrings/Biostrings/Biostrings/src/XVector_stubs.c	file
R-Biostrings/Biostrings/Biostrings/tests	directory
R-Biostrings/Biostrings/Biostrings/tests/run_unitTests.R	file
R-Biostrings/Biostrings/Biostrings/vignettes	directory
R-Biostrings/Biostrings/Biostrings/vignettes/Biostrings2Classes.Rnw	file
R-Biostrings/Biostrings/Biostrings/vignettes/BiostringsQuickOverview.Rnw	file
R-Biostrings/Biostrings/Biostrings/vignettes/matchprobes.Rnw	file
R-Biostrings/Biostrings/Biostrings/vignettes/MultipleAlignments.Rnw	file
R-Biostrings/Biostrings/Biostrings/vignettes/PairwiseAlignments.Rnw	file
R-Biostrings/Biostrings/Biostrings/vignettes/SolexaYi2-benchmark.txt	file

Holders

path	holder	start	end

Authors

path	Author	start	end

Emails

path	email	start	end

Urls

path	url	start	end

License References

key	short_name	category	owner	scancode_url	licensedb_url	homepage_url	text_urls	spdx_license_key	spdx_url
artistic-2.0	Artistic 2.0	Copyleft Limited	Perl Foundation	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/artistic-2.0.LICENSE	https://scancode-licensedb.aboutcode.org/artistic-2.0	http://www.perlfoundation.org/	https://www.perlfoundation.org/artistic_license_2_0 https://www.perlfoundation.org/attachment/legal/artistic-2_0.txt	Artistic-2.0	https://spdx.org/licenses/Artistic-2.0
lgpl-2.0-plus	LGPL 2.0 or later	Copyleft Limited	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/lgpl-2.0-plus.LICENSE	https://scancode-licensedb.aboutcode.org/lgpl-2.0-plus	http://www.gnu.org/licenses/old-licenses/lgpl-2.0.html	http://www.gnu.org/licenses/old-licenses/lgpl-2.0-standalone.html	LGPL-2.0-or-later	https://spdx.org/licenses/LGPL-2.0-or-later