Copyrights and Licenses Information
path start end what value
R-GenomicAlignments/R-GenomicAlignments.spec 10 10 license artistic-2.0
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/DESCRIPTION 15 15 license artistic-2.0
File Information
path type name extension date size sha1 md5 files_count mime_type file_type programming_language is_binary is_text is_archive is_media is_source is_script
R-GenomicAlignments directory
R-GenomicAlignments/GenomicAlignments-SPECPARTS directory
R-GenomicAlignments/GenomicAlignments_1.32.1.tar.gz file
R-GenomicAlignments/R-GenomicAlignments.spec file
R-GenomicAlignments/sources file
R-GenomicAlignments/GenomicAlignments directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/DESCRIPTION file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/NAMESPACE file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/NEWS file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/README.md file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/build directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/build/vignette.rds file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/CITATION file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc/GenomicAlignmentsIntroduction.pdf file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc/GenomicAlignmentsIntroduction.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc/GenomicAlignmentsIntroduction.Rnw file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc/OverlapEncodings.pdf file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc/OverlapEncodings.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc/OverlapEncodings.Rnw file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc/summarizeOverlaps.pdf file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc/summarizeOverlaps.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc/summarizeOverlaps.Rnw file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc/WorkingWithAlignedNucleotides.pdf file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc/WorkingWithAlignedNucleotides.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/doc/WorkingWithAlignedNucleotides.Rnw file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/extdata directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/extdata/sm_treated1.bam file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/extdata/sm_untreated1.bam file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/unitTests directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/unitTests/test_cigar-utils.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/unitTests/test_coordinate-mapping-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/unitTests/test_findSpliceOverlaps-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/unitTests/test_GAlignments-class.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/unitTests/test_GAlignmentsList-class.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/unitTests/test_intra-range-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/unitTests/test_readGAlignmentPairs.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/unitTests/test_readGAlignments.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/unitTests/test_readGAlignmentsList.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/inst/unitTests/test_summarizeOverlaps-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/cigar-utils.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/coordinate-mapping-methods.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/coverage-methods.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/encodeOverlaps-methods.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/findCompatibleOverlaps-methods.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/findMateAlignment.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/findOverlaps-methods.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/findSpliceOverlaps-methods.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/GAlignmentPairs-class.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/GAlignments-class.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/GAlignmentsList-class.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/GappedReads-class.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/intra-range-methods.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/junctions-methods.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/OverlapEncodings-class.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/pileLettersAt.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/readGAlignments.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/sequenceLayer.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/setops-methods.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/stackStringsFromGAlignments.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/man/summarizeOverlaps-methods.Rd file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/cigar-utils.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/coordinate-mapping-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/coverage-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/encodeOverlaps-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/findCompatibleOverlaps-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/findMateAlignment.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/findOverlaps-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/findSpliceOverlaps-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/GAlignmentPairs-class.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/GAlignments-class.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/GAlignmentsList-class.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/GappedReads-class.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/intra-range-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/junctions-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/OverlapEncodings-class.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/pileLettersAt.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/readGAlignments.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/sequenceLayer.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/setops-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/stackStringsFromGAlignments.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/summarizeOverlaps-methods.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/utils.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/R/zzz.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/src directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/src/cigar_utils.c file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/src/coordinate_mapping_methods.c file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/src/encodeOverlaps_methods.c file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/src/GenomicAlignments.h file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/src/IRanges_stubs.c file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/src/R_init_GenomicAlignments.c file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/src/S4Vectors_stubs.c file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/tests directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/tests/run_unitTests.R file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/vignettes directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/vignettes/GenomicAlignmentsIntroduction.Rnw file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/vignettes/OverlapEncodings.Rnw file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/vignettes/summarizeOverlaps-modes.pdf file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/vignettes/summarizeOverlaps.Rnw file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/vignettes/WorkingWithAlignedNucleotides.Rnw file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/vignettes/precomputed_results directory
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/vignettes/precomputed_results/exbytx.rda file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/vignettes/precomputed_results/U1.sbcompHITSa.rda file
R-GenomicAlignments/GenomicAlignments/GenomicAlignments/vignettes/precomputed_results/U1.sbcompHITSb.rda file
Holders
path holder start end
Authors
path Author start end
Emails
path email start end
Urls
path url start end
License References
key short_name category owner scancode_url licensedb_url homepage_url text_urls spdx_license_key spdx_url
artistic-2.0 Artistic 2.0 Copyleft Limited Perl Foundation https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/artistic-2.0.LICENSE https://scancode-licensedb.aboutcode.org/artistic-2.0 http://www.perlfoundation.org/ https://www.perlfoundation.org/artistic_license_2_0 https://www.perlfoundation.org/attachment/legal/artistic-2_0.txt Artistic-2.0 https://spdx.org/licenses/Artistic-2.0