Copyrights and Licenses Information

path	start	end	what	value
R-Rsamtools/R-Rsamtools.spec	10	10	license	artistic-2.0
R-Rsamtools/R-Rsamtools.spec	24	24	license	unknown-license-reference
R-Rsamtools/Rsamtools/Rsamtools/DESCRIPTION	15	15	license	artistic-2.0
R-Rsamtools/Rsamtools/Rsamtools/LICENSE	3	3	license	mit
R-Rsamtools/Rsamtools/Rsamtools/LICENSE	7	23	license	mit

File Information

path	type	name	extension	date	size	sha1	md5	files_count	mime_type	file_type	programming_language	is_binary	is_text	is_archive	is_media	is_source	is_script
R-Rsamtools	directory
R-Rsamtools/R-Rsamtools-zlibbioc.patch	file
R-Rsamtools/R-Rsamtools.spec	file
R-Rsamtools/Rsamtools-SPECPARTS	directory
R-Rsamtools/Rsamtools_2.12.0.tar.gz	file
R-Rsamtools/sources	file
R-Rsamtools/Rsamtools	directory
R-Rsamtools/Rsamtools/Rsamtools	directory
R-Rsamtools/Rsamtools/Rsamtools/DESCRIPTION	file
R-Rsamtools/Rsamtools/Rsamtools/LICENSE	file
R-Rsamtools/Rsamtools/Rsamtools/migration_notes.md	file
R-Rsamtools/Rsamtools/Rsamtools/NAMESPACE	file
R-Rsamtools/Rsamtools/Rsamtools/NEWS	file
R-Rsamtools/Rsamtools/Rsamtools/README.md	file
R-Rsamtools/Rsamtools/Rsamtools/build	directory
R-Rsamtools/Rsamtools/Rsamtools/build/vignette.rds	file
R-Rsamtools/Rsamtools/Rsamtools/inst	directory
R-Rsamtools/Rsamtools/Rsamtools/inst/doc	directory
R-Rsamtools/Rsamtools/Rsamtools/inst/doc/Rsamtools-Overview.pdf	file
R-Rsamtools/Rsamtools/Rsamtools/inst/doc/Rsamtools-Overview.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/doc/Rsamtools-Overview.Rnw	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata	directory
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/ce2dict1.fa	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/ce2dict1.fa.fai	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/ex1.bam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/ex1.bam.bai	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/ex1.bcf.gz	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/ex1.bcf.gz.csi	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/ex1.sam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/ex1.vcf.gz	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/ex1.vcf.gz.csi	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/example.gtf.gz	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/example.gtf.gz.tbi	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/example_from_SAM_Spec.bam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/example_from_SAM_Spec.bam.bai	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/example_from_SAM_Spec.sam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/no_which_buffered_pileup.bam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/no_which_buffered_pileup.bam.bai	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/no_which_buffered_pileup.sam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/no_which_whole_file.bam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/no_which_whole_file.bam.bai	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/no_which_whole_file.sam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/olaps.Rda	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/pileup.txt	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/querybins.bam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/querybins.bam.bai	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/querybins.sam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/revbins.bam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/revbins.bam.bai	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/revbins.sam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/samtools-github.txt	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/slxMaq09_urls.txt	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/tagfilter.bam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/tagfilter.bam.bai	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/tagfilter.sam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/tiny.bam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/tiny.bam.bai	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/tiny.sam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/tophat	directory
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/tophat/accepted_hits.sam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/tophat/coverage.wig	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/tophat/junctions.bed	file
R-Rsamtools/Rsamtools/Rsamtools/inst/extdata/tophat/README	file
R-Rsamtools/Rsamtools/Rsamtools/inst/scripts	directory
R-Rsamtools/Rsamtools/Rsamtools/inst/scripts/BamViews-1000g.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/scripts/features.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/scripts/remote_test.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/scripts/update-samtools.sh	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests	directory
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_applyPileups.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_asBam.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_bam.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_bam_count.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_bam_header.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_BamFile.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_BamViews.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_BcfFile.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_compression.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_FaFile.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_mapqfilter.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_phred2ASCIIOffset.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_pileup_nowhich.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_pileup_querybins.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_pileup_revbins.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_pileup_single_range.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_readPileup.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_RsamtoolsFile.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_scanBamFlag.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_sortBam_test.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_TabixFile.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_tagfilter.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_testPairedEndBam.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/test_utilities.R	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases	directory
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases/ex1.sam.gz	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases/ex1_noindex.bam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases/ex1_shuf1000.bam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases/ex1_shuf1000.bam.bai	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases/ex1_unsort.bam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases/ex1_zero_index.bam.bai	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases/no_header_line.vcf.gz	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases/no_SAMPLE_header.vcf.gz	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases/pileup-no-stars.txt	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases/plp_refskip.bam	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases/plp_refskip.bam.bai	file
R-Rsamtools/Rsamtools/Rsamtools/inst/unitTests/cases/RNEXT.bam	file
R-Rsamtools/Rsamtools/Rsamtools/man	directory
R-Rsamtools/Rsamtools/Rsamtools/man/applyPileups.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/ApplyPileupsParam-class.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/BamFile-class.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/BamViews-class.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/BcfFile-class.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/defunct.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/deprecated.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/FaFile-class.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/headerTabix.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/indexTabix.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/pileup.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/PileupFiles-class.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/quickBamFlagSummary.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/readPileup.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/Rsamtools-package.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/RsamtoolsFile-class.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/RsamtoolsFileList-class.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/scanBam.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/ScanBamParam-class.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/scanBcf.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/ScanBcfParam-class.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/scanFa.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/scanTabix.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/seqnamesTabix.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/TabixFile-class.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/testPairedEndBam.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/man/zip.Rd	file
R-Rsamtools/Rsamtools/Rsamtools/R	directory
R-Rsamtools/Rsamtools/Rsamtools/R/AllClasses.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/AllGenerics.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/asBam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/countBam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/filterBam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/idxstatsBam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/indexBam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/io_bam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/mergeBam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-ApplyPileupsParam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-BamFile.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-BamFileList.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-BamSampler.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-BamViews.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-BcfFile.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-FaFile.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-PileupFiles.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-RsamtoolsFile.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-RsamtoolsFileList.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-ScanBamParam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-ScanBVcfParam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/methods-TabixFile.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/phred2ASCIIOffset.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/pileup.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/pkgconfig.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/quickBamFlagSummary.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/readPileup.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/scanBam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/scanBamHeader.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/scanBcf.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/scanBcfHeader.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/sortBam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/testPairedEndBam.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/utilities.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/zip_compression.R	file
R-Rsamtools/Rsamtools/Rsamtools/R/zzz.R	file
R-Rsamtools/Rsamtools/Rsamtools/src	directory
R-Rsamtools/Rsamtools/Rsamtools/src/as_bam.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/as_bam.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/bam.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/bam_data.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/bam_data.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/bam_mate_iter.cpp	file
R-Rsamtools/Rsamtools/Rsamtools/src/bam_mate_iter.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/bam_plbuf.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/bam_sort.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/bambuffer.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/bambuffer.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/bamfile.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/bamfile.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/BamFileIterator.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/BamIterator.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/BamRangeIterator.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/bcffile.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/bcffile.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/Biostrings_stubs.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/COMPAT_bcf_hdr_read.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/COMPAT_bcf_hdr_read.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/encode.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/encode.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/fafile.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/fafile.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/GenomicPosition.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/idxstats.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/idxstats.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/io_sam.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/io_sam.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/IRanges_stubs.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/Makevars	file
R-Rsamtools/Rsamtools/Rsamtools/src/pbuffer_wrapper.cpp	file
R-Rsamtools/Rsamtools/Rsamtools/src/pbuffer_wrapper.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/pileup.cpp	file
R-Rsamtools/Rsamtools/Rsamtools/src/pileup.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/pileupbam.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/pileupbam.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/PileupBuffer.cpp	file
R-Rsamtools/Rsamtools/Rsamtools/src/PileupBuffer.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/PileupBufferShim.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/PosCache.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/PosCacheColl.cpp	file
R-Rsamtools/Rsamtools/Rsamtools/src/PosCacheColl.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/R_init_Rsamtools.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/ResultManager.cpp	file
R-Rsamtools/Rsamtools/Rsamtools/src/ResultManager.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/S4Vectors_stubs.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/sam.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/sam_opts.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/sam_utils.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/samtools_patch.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/samtools_patch.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/scan_bam_data.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/scan_bam_data.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/tabixfile.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/tabixfile.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/tagfilter.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/tagfilter.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/Template.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/utilities.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/utilities.h	file
R-Rsamtools/Rsamtools/Rsamtools/src/XVector_stubs.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/zip_compression.c	file
R-Rsamtools/Rsamtools/Rsamtools/src/zip_compression.h	file
R-Rsamtools/Rsamtools/Rsamtools/tests	directory
R-Rsamtools/Rsamtools/Rsamtools/tests/Rsamtools_unit_tests.R	file
R-Rsamtools/Rsamtools/Rsamtools/vignettes	directory
R-Rsamtools/Rsamtools/Rsamtools/vignettes/Rsamtools-Overview.Rnw	file

Holders

path	holder	start	end

Authors

path	Author	start	end

Emails

path	email	start	end

Urls

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License References

key	short_name	category	owner	scancode_url	licensedb_url	homepage_url	text_urls	spdx_license_key	spdx_url
artistic-2.0	Artistic 2.0	Copyleft Limited	Perl Foundation	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/artistic-2.0.LICENSE	https://scancode-licensedb.aboutcode.org/artistic-2.0	http://www.perlfoundation.org/	https://www.perlfoundation.org/artistic_license_2_0 https://www.perlfoundation.org/attachment/legal/artistic-2_0.txt	Artistic-2.0	https://spdx.org/licenses/Artistic-2.0
mit	MIT License	Permissive	MIT	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/mit.LICENSE	https://scancode-licensedb.aboutcode.org/mit	http://opensource.org/licenses/mit-license.php	http://opensource.org/licenses/mit-license.php	MIT	https://spdx.org/licenses/MIT
unknown-license-reference	Unknown License reference	Unstated License	Unspecified	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/unknown-license-reference.LICENSE	https://scancode-licensedb.aboutcode.org/unknown-license-reference	None		LicenseRef-scancode-unknown-license-reference	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/unknown-license-reference.LICENSE