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apbs/apbs-LGPL_V2 1 482 license lgpl-2.0
apbs/apbs.spec 15 15 license lgpl-2.0-plus
apbs/apbs.spec 15 15 license bsd-new
apbs/apbs.spec 16 16 license lgpl-2.0-plus
apbs/apbs.spec 19 19 license lgpl-2.0
apbs/apbs.spec 116 116 license lgpl-2.0
apbs/apbs.spec 179 179 license lgpl-2.0
apbs/apbs-3.0.0/COPYING 17 31 license bsd-new
apbs/apbs-3.0.0/LICENSE.md 17 31 license bsd-new
apbs/apbs-3.0.0/contrib/iapbs/COPYING 1 340 license gpl-2.0
apbs/apbs-3.0.0/contrib/iapbs/iapbs-COPYING 1 340 license gpl-2.0
apbs/apbs-3.0.0/contrib/iapbs/iapbs-LGPLv2 1 482 license lgpl-2.0
apbs/apbs-3.0.0/contrib/iapbs/doc/license/LICENSE.txt 13 25 license gpl-2.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-debug.out.save 20 36 license gpl-2.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-debug.out.save 35 36 license gpl-2.0
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-debug.out.save 38 38 license gpl-1.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-debug.out.save 39 39 license generic-exception
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-debug.out.save 41 41 license lgpl-2.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-debug.out.save 45 46 license gpl-2.0
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-debug.out.save 47 47 license gpl-1.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-debug.out.save 52 52 license gpl-1.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac-debug.out.save 20 36 license gpl-2.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac-debug.out.save 35 36 license gpl-2.0
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac-debug.out.save 38 38 license gpl-1.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac-debug.out.save 39 39 license generic-exception
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac-debug.out.save 41 41 license lgpl-2.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac-debug.out.save 45 46 license gpl-2.0
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac-debug.out.save 47 47 license gpl-1.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac-debug.out.save 52 52 license gpl-1.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac.out.save 20 36 license gpl-2.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac.out.save 35 36 license gpl-2.0
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac.out.save 38 38 license gpl-1.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac.out.save 39 39 license generic-exception
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac.out.save 41 41 license lgpl-2.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac.out.save 45 46 license gpl-2.0
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac.out.save 47 47 license gpl-1.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs-vac.out.save 52 52 license gpl-1.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs.out.save 20 36 license gpl-2.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs.out.save 35 36 license gpl-2.0
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs.out.save 38 38 license gpl-1.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs.out.save 39 39 license generic-exception
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs.out.save 41 41 license lgpl-2.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs.out.save 45 46 license gpl-2.0
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs.out.save 47 47 license gpl-1.0-plus
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Solvation/APBS/solvation-apbs.out.save 52 52 license gpl-1.0-plus
apbs/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c 498 498 license mongodb-sspl-1.0
apbs/apbs-3.0.0/contrib/iapbs/test/ndiff.awk 10 11 license gpl-2.0-plus
apbs/apbs-3.0.0/doc/programmer/.config/mainpage.h.in 47 70 license bsd-new
apbs/apbs-3.0.0/examples/alkanes/Makefile.in 7 14 license fsf-unlimited-no-warranty
apbs/apbs-3.0.0/examples/misc/apbs-PDB.in 35 35 license mongodb-sspl-1.0
apbs/apbs-3.0.0/examples/misc/apbs.in 35 35 license mongodb-sspl-1.0
apbs/apbs-3.0.0/examples/protein-rna/Makefile.in 7 14 license fsf-unlimited-no-warranty
apbs/apbs-3.0.0/examples/solv/Makefile.in 7 14 license fsf-unlimited-no-warranty
apbs/apbs-3.0.0/include/Eigen/Core 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/Eigen2Support 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/OrderingMethods 59 59 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/SparseCholesky 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/SparseCholesky 41 41 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/SparseLU 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/StdDeque 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/StdList 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/StdVector 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Cholesky/LDLT.h 9 11 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Cholesky/LLT.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Cholesky/LLT_MKL.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/CholmodSupport/CholmodSupport.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Array.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/ArrayBase.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/ArrayWrapper.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Assign.h 8 10 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Assign_MKL.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/Core/BandMatrix.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Block.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/BooleanRedux.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/CommaInitializer.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/CoreIterators.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/CwiseBinaryOp.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/CwiseNullaryOp.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/CwiseUnaryOp.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/CwiseUnaryView.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/DenseBase.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/DenseCoeffsBase.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/DenseStorage.h 8 10 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Diagonal.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/DiagonalMatrix.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/DiagonalProduct.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Dot.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/EigenBase.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Flagged.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/ForceAlignedAccess.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Functors.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Fuzzy.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/GeneralProduct.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/GenericPacketMath.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/GlobalFunctions.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/IO.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Map.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/MapBase.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/MathFunctions.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Matrix.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/MatrixBase.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/NestByValue.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/NoAlias.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/NumTraits.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/PermutationMatrix.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/PlainObjectBase.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/ProductBase.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Random.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Redux.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Ref.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Replicate.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/ReturnByValue.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Reverse.h 8 10 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Select.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/SelfAdjointView.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/SelfCwiseBinaryOp.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/SolveTriangular.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/StableNorm.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Stride.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Swap.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Transpose.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Transpositions.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/TriangularMatrix.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/VectorBlock.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/VectorwiseOp.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/Visitor.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/arch/AltiVec/Complex.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/arch/AltiVec/PacketMath.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/arch/Default/Settings.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/arch/NEON/Complex.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/arch/NEON/PacketMath.h 8 10 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/arch/SSE/Complex.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/arch/SSE/MathFunctions.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/arch/SSE/PacketMath.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/CoeffBasedProduct.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/GeneralMatrixMatrix.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/GeneralMatrixMatrix_MKL.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_MKL.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/Core/products/GeneralMatrixVector.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/GeneralMatrixVector_MKL.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/Core/products/Parallelizer.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_MKL.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/Core/products/SelfadjointMatrixVector.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/SelfadjointMatrixVector_MKL.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/Core/products/SelfadjointProduct.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/SelfadjointRank2Update.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/TriangularMatrixMatrix.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/TriangularMatrixMatrix_MKL.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/Core/products/TriangularMatrixVector.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/TriangularMatrixVector_MKL.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/Core/products/TriangularSolverMatrix.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/products/TriangularSolverMatrix_MKL.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/Core/products/TriangularSolverVector.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/util/BlasUtil.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/util/Constants.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/util/ForwardDeclarations.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/util/Macros.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/util/Memory.h 10 12 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/util/Meta.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/util/MKL_support.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/Core/util/StaticAssert.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Core/util/XprHelper.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Block.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Cwise.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/CwiseOperators.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Lazy.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/LeastSquares.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/LU.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Macros.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/MathFunctions.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Memory.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Meta.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Minor.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/QR.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/SVD.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/TriangularSolver.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/VectorBlock.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Geometry/AlignedBox.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Geometry/AngleAxis.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Geometry/Hyperplane.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Geometry/ParametrizedLine.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Geometry/Quaternion.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Geometry/Rotation2D.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Geometry/RotationBase.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Geometry/Scaling.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Geometry/Transform.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigen2Support/Geometry/Translation.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h 8 10 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/ComplexSchur.h 8 10 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/ComplexSchur_MKL.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/EigenSolver.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/RealQZ.h 6 8 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/RealSchur.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/RealSchur_MKL.h 4 25 license bsd-new
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h 7 9 license mpl-2.0
apbs/apbs-3.0.0/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_MKL.h 4 25 license bsd-new
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apbs/apbs-3.0.0/tools/python/main.py 122 146 license bsd-new
apbs/apbs-3.0.0/tools/python/Makefile 7 14 license fsf-unlimited-no-warranty
apbs/apbs-3.0.0/tools/python/Makefile.in 7 14 license fsf-unlimited-no-warranty
apbs/apbs-3.0.0/tools/python/noinput.py 173 197 license bsd-new
apbs/apbs-3.0.0/tools/python/vgrid/Makefile 7 14 license fsf-unlimited-no-warranty
apbs/apbs-3.0.0/tools/python/vgrid/Makefile.in 7 14 license fsf-unlimited-no-warranty
apbs/apbs-3.0.0/tools/windows/configuration headers/maloccf.h 9 21 license gpl-2.0-plus
apbs/apbs-3.0.0/tools/windows/NSI configuration/apbs.nsi 43 43 license ace-tao
File Information
path type name extension date size sha1 md5 files_count mime_type file_type programming_language is_binary is_text is_archive is_media is_source is_script
apbs directory
apbs/apbs-3.0.0-SPECPARTS directory
apbs/apbs-3.0.0.tar.gz file
apbs/apbs-c99.patch file
apbs/apbs-cmake.patch file
apbs/apbs-exclude_tests.patch file
apbs/apbs-LGPL_V2 file
apbs/apbs-python311.patch file
apbs/apbs.spec file
apbs/sources file
apbs/apbs-3.0.0 directory
apbs/apbs-3.0.0/.build.sh file
apbs/apbs-3.0.0/CMakeLists.txt file
apbs/apbs-3.0.0/CMakeLists.txt.apbs-cmake file
apbs/apbs-3.0.0/COPYING file
apbs/apbs-3.0.0/LICENSE.md file
apbs/apbs-3.0.0/README.md file
apbs/apbs-3.0.0/contrib directory
apbs/apbs-3.0.0/contrib/iapbs directory
apbs/apbs-3.0.0/contrib/iapbs/AUTHORS file
apbs/apbs-3.0.0/contrib/iapbs/ChangeLog file
apbs/apbs-3.0.0/contrib/iapbs/CMakeLists.txt file
apbs/apbs-3.0.0/contrib/iapbs/COPYING file
apbs/apbs-3.0.0/contrib/iapbs/iapbs-COPYING file
apbs/apbs-3.0.0/contrib/iapbs/iapbs-LGPLv2 file
apbs/apbs-3.0.0/contrib/iapbs/INSTALL file
apbs/apbs-3.0.0/contrib/iapbs/NEWS file
apbs/apbs-3.0.0/contrib/iapbs/README file
apbs/apbs-3.0.0/contrib/iapbs/doc directory
apbs/apbs-3.0.0/contrib/iapbs/doc/index.html file
apbs/apbs-3.0.0/contrib/iapbs/doc/README file
apbs/apbs-3.0.0/contrib/iapbs/doc/license directory
apbs/apbs-3.0.0/contrib/iapbs/doc/license/LICENSE.txt file
apbs/apbs-3.0.0/contrib/iapbs/doc/programmer directory
apbs/apbs-3.0.0/contrib/iapbs/doc/programmer/Doxyfile.in file
apbs/apbs-3.0.0/contrib/iapbs/doc/programmer/Makefile file
apbs/apbs-3.0.0/contrib/iapbs/etc directory
apbs/apbs-3.0.0/contrib/iapbs/etc/iapbs-version.mk file
apbs/apbs-3.0.0/contrib/iapbs/modules directory
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber directory
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/apbs.f90 file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/apbs_vars.f90 file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/examples directory
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/examples/md.in file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/examples/solvation.in file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/examples/vis.in file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/patches directory
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/patches/amber10_mm_pbsa.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/patches/amber10_sander.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/patches/amber9_mm_pbsa.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/patches/amber9_sander.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test directory
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/Makefile file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/notes.txt file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/2ALA directory
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/2ALA/2ala.pdb file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/2ALA/leap.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/2ALA/leaprc file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/2ALA/min-apbs.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA directory
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/ala-apbs.in file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/ala.pdb file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/ala.pqr file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/inpcrd file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/leap.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/leaprc file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/md-apbs.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/md-pb.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/md.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/min-apbs.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/min-pb.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/min.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/pbparamsin file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/prmtop file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/sp-apbs.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/sp-pb.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/sp.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/vis-apbs.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/ALA/vis-pb.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_min directory
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_min/2ala.prmcrd file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_min/2ala.prmtop file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_min/minim.in file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_min/minim.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_min/minim.out.save.amber9 file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_min/pqr file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_min/Run.apbs.min file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi directory
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/Run.ion.min file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save directory
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/alabk.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/arg.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/ash.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/asn.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/asp.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/Br.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/Ca.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/Cl.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/Cs.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/cym.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/cys.out.save file
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apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/da.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/da3p.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/da5p.out.save file
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apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/dc.out.save file
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apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/glybk.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/hid.out.save file
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apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/out.save/hip.out.save file
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apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/prmtop-inpcrd directory
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apbs/apbs-3.0.0/contrib/iapbs/modules/Amber/test/apbs_radi/prmtop-inpcrd/ash.inpcrd file
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apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c29b2/install.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c29b2/Makefile_gnu.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c29b2/misc.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c29b2/pbeq.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c29b2/README file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c31a1 directory
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c31a1/energy.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c31a1/install.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c31a1/Makefile_gnu.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c31a1/misc.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c31a1/pbeq.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c31a1/README file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c32a2 directory
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c32a2/energy.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c32a2/install.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c32a2/Makefile_gnu.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c32a2/misc.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c32a2/pbeq.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c32a2/README file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c34b2 directory
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c34b2/install.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c34b2/Makefile_gnu.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c34b2/pbeq.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c34b2/README file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c35b2 directory
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c35b2/install.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c35b2/Makefile_gnu.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c35b2/pbeq.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c35b2/README file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c41b2 directory
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c41b2/apbs.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c41b2/install.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/CHARMM/patches/c41b2/Makefile_gnu.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD directory
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/GlobalMasterAPBS.C file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/GlobalMasterAPBS.h file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/Linux-i686.apbs file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/Linux-x86_64.apbs file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/MacOSX-PPC.apbs file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/README file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches directory
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/charmrun-20092904.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/namd2-apbs-2.10b2.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/namd2-apbs-2.11.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/namd2-apbs-2.7b2.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/namd2-apbs-2.8.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/namd2-apbs-2.9.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/namd2-apbs-20071206.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/namd2-apbs-20090727.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/namd2-apbs-20091117.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/namd2-apbs-20092904.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/namd2-apbs-20110315.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/namd2-apbs-20120215.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/patches/namd2-apbs-cvs-2013.3.18.patch file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test directory
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide directory
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/apbs-md.conf file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/apbs-solvation.conf file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/apbs-visualization.conf file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/dipeptide.crd file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/dipeptide.pdb file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/dipeptide.pqr file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/dipeptide.top file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/Makefile.am file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/test.sh file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/save directory
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/save/apbs-md.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/save/apbs-solvation.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/dipeptide/save/apbs-visualization.out.save file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/ubq directory
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/ubq/1UBQ.pdb file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/ubq/par_all27_prot_lipid.inp file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/ubq/ubq.conf file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/ubq/ubq.pdb file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/ubq/ubq.pqr file
apbs/apbs-3.0.0/contrib/iapbs/modules/NAMD/test/ubq/ubq.psf file
apbs/apbs-3.0.0/contrib/iapbs/src directory
apbs/apbs-3.0.0/contrib/iapbs/src/apbs_driver.c file
apbs/apbs-3.0.0/contrib/iapbs/src/apbs_driver.h file
apbs/apbs-3.0.0/contrib/iapbs/src/CMakeLists.txt file
apbs/apbs-3.0.0/contrib/iapbs/src/wrapper.cpp file
apbs/apbs-3.0.0/contrib/iapbs/src/wrapper.f file
apbs/apbs-3.0.0/contrib/iapbs/src/wrapper_inc.f file
apbs/apbs-3.0.0/contrib/iapbs/test directory
apbs/apbs-3.0.0/contrib/iapbs/test/apbs-forces-tot.in file
apbs/apbs-3.0.0/contrib/iapbs/test/apbs-forces.in file
apbs/apbs-3.0.0/contrib/iapbs/test/apbs-forces.pqr file
apbs/apbs-3.0.0/contrib/iapbs/test/apbs-maps-read.in file
apbs/apbs-3.0.0/contrib/iapbs/test/apbs-maps-write.in file
apbs/apbs-3.0.0/contrib/iapbs/test/apbs.d9.in file
apbs/apbs-3.0.0/contrib/iapbs/test/apbs.in file
apbs/apbs-3.0.0/contrib/iapbs/test/apbs.pqr file
apbs/apbs-3.0.0/contrib/iapbs/test/mem.sh file
apbs/apbs-3.0.0/contrib/iapbs/test/mol1-auto.in file
apbs/apbs-3.0.0/contrib/iapbs/test/mol1-manual-loop.in file
apbs/apbs-3.0.0/contrib/iapbs/test/mol1-manual.in file
apbs/apbs-3.0.0/contrib/iapbs/test/mol1.pqr file
apbs/apbs-3.0.0/contrib/iapbs/test/ndiff.awk file
apbs/apbs-3.0.0/contrib/iapbs/test/parallel.in file
apbs/apbs-3.0.0/contrib/iapbs/test/smpbe-2ala.in file
apbs/apbs-3.0.0/contrib/iapbs/test/smpbe-2ala.pqr file
apbs/apbs-3.0.0/contrib/iapbs/test/smpbe-ion.in file
apbs/apbs-3.0.0/contrib/iapbs/test/smpbe-ion.pqr file
apbs/apbs-3.0.0/contrib/iapbs/test/test.sh file
apbs/apbs-3.0.0/contrib/iapbs/test/save directory
apbs/apbs-3.0.0/contrib/iapbs/test/save/apbs-forces-tot.out.save file
apbs/apbs-3.0.0/contrib/iapbs/test/save/apbs-forces.out.save file
apbs/apbs-3.0.0/contrib/iapbs/test/save/apbs.d9.out.save file
apbs/apbs-3.0.0/contrib/iapbs/test/save/apbs.out.save file
apbs/apbs-3.0.0/contrib/iapbs/test/save/mol1-auto.out.save file
apbs/apbs-3.0.0/contrib/iapbs/test/save/mol1-manual-loop.out.save file
apbs/apbs-3.0.0/contrib/iapbs/test/save/mol1-manual.out.save file
apbs/apbs-3.0.0/contrib/iapbs/test/save/smpbe-2ala.out.save file
apbs/apbs-3.0.0/contrib/iapbs/test/save/smpbe-ion.out.save file
apbs/apbs-3.0.0/doc directory
apbs/apbs-3.0.0/doc/ChangeLog.md file
apbs/apbs-3.0.0/doc/CMakeLists.txt file
apbs/apbs-3.0.0/doc/README file
apbs/apbs-3.0.0/doc/release_procedure.md file
apbs/apbs-3.0.0/doc/ReleaseNotes.md file
apbs/apbs-3.0.0/doc/data-ontology directory
apbs/apbs-3.0.0/doc/data-ontology/catalog-v001.xml file
apbs/apbs-3.0.0/doc/data-ontology/data-ontology.ttl file
apbs/apbs-3.0.0/doc/data-ontology/protege.sh file
apbs/apbs-3.0.0/doc/data-ontology/README.md file
apbs/apbs-3.0.0/doc/icons directory
apbs/apbs-3.0.0/doc/icons/APBS_1024.png file
apbs/apbs-3.0.0/doc/icons/APBS_128.png file
apbs/apbs-3.0.0/doc/icons/APBS_128_v2.png file
apbs/apbs-3.0.0/doc/icons/APBS_16.png file
apbs/apbs-3.0.0/doc/icons/APBS_256.png file
apbs/apbs-3.0.0/doc/icons/APBS_32.png file
apbs/apbs-3.0.0/doc/icons/APBS_512.png file
apbs/apbs-3.0.0/doc/icons/APBS_64.png file
apbs/apbs-3.0.0/doc/programmer directory
apbs/apbs-3.0.0/doc/programmer/.config directory
apbs/apbs-3.0.0/doc/programmer/.config/Doxyfile.in file
apbs/apbs-3.0.0/doc/programmer/.config/mainpage.h.in file
apbs/apbs-3.0.0/doc/programmer/.config/programmer.html.in file
apbs/apbs-3.0.0/examples directory
apbs/apbs-3.0.0/examples/README.md file
apbs/apbs-3.0.0/examples/actin-dimer directory
apbs/apbs-3.0.0/examples/actin-dimer/apbs-mol-auto.in file
apbs/apbs-3.0.0/examples/actin-dimer/apbs-mol-parallel.in file
apbs/apbs-3.0.0/examples/actin-dimer/apbs-smol-auto.in file
apbs/apbs-3.0.0/examples/actin-dimer/apbs-smol-parallel.in file
apbs/apbs-3.0.0/examples/actin-dimer/complex.pqr file
apbs/apbs-3.0.0/examples/actin-dimer/mesh.m file
apbs/apbs-3.0.0/examples/actin-dimer/mol1.pqr file
apbs/apbs-3.0.0/examples/actin-dimer/mol2.pqr file
apbs/apbs-3.0.0/examples/actin-dimer/README.md file
apbs/apbs-3.0.0/examples/actin-dimer/UHBD directory
apbs/apbs-3.0.0/examples/actin-dimer/UHBD/aheall-atom.charmm.dat file
apbs/apbs-3.0.0/examples/actin-dimer/UHBD/nuc.3-4.full.log file
apbs/apbs-3.0.0/examples/actin-dimer/UHBD/nuc.3-4.inp file
apbs/apbs-3.0.0/examples/actin-dimer/UHBD/prot3.pdb file
apbs/apbs-3.0.0/examples/actin-dimer/UHBD/prot4.pdb file
apbs/apbs-3.0.0/examples/actin-dimer/UHBD/single.inp file
apbs/apbs-3.0.0/examples/actin-dimer/UHBD/srsrf.dot file
apbs/apbs-3.0.0/examples/alkanes directory
apbs/apbs-3.0.0/examples/alkanes/2-methylbutane.pdb file
apbs/apbs-3.0.0/examples/alkanes/alkanes.in file
apbs/apbs-3.0.0/examples/alkanes/apbs-forces.in file
apbs/apbs-3.0.0/examples/alkanes/butane.pdb file
apbs/apbs-3.0.0/examples/alkanes/cyclohexane.pdb file
apbs/apbs-3.0.0/examples/alkanes/cyclopentane.pdb file
apbs/apbs-3.0.0/examples/alkanes/ethane.pdb file
apbs/apbs-3.0.0/examples/alkanes/force.result file
apbs/apbs-3.0.0/examples/alkanes/hexane.pdb file
apbs/apbs-3.0.0/examples/alkanes/isobutane.pdb file
apbs/apbs-3.0.0/examples/alkanes/Makefile.in file
apbs/apbs-3.0.0/examples/alkanes/methane.pdb file
apbs/apbs-3.0.0/examples/alkanes/mol.pdb file
apbs/apbs-3.0.0/examples/alkanes/neopentane.pdb file
apbs/apbs-3.0.0/examples/alkanes/parm.dat file
apbs/apbs-3.0.0/examples/alkanes/pentane.pdb file
apbs/apbs-3.0.0/examples/alkanes/propane.pdb file
apbs/apbs-3.0.0/examples/alkanes/README.md file
apbs/apbs-3.0.0/examples/bem directory
apbs/apbs-3.0.0/examples/bem/1a63_msms.in file
apbs/apbs-3.0.0/examples/bem/1a63_NanoShaper_SES.in file
apbs/apbs-3.0.0/examples/bem/1a63_NanoShaper_Skin.in file
apbs/apbs-3.0.0/examples/bem/451c_order1.in file
apbs/apbs-3.0.0/examples/bem/451c_order5.in file
apbs/apbs-3.0.0/examples/bem/README.md file
apbs/apbs-3.0.0/examples/bem/test_proteins directory
apbs/apbs-3.0.0/examples/bem/test_proteins/1a63.pqr file
apbs/apbs-3.0.0/examples/bem/test_proteins/1ajj.pqr file
apbs/apbs-3.0.0/examples/bem/test_proteins/1bbl.pqr file
apbs/apbs-3.0.0/examples/bem/test_proteins/451c.pqr file
apbs/apbs-3.0.0/examples/bem/test_proteins/oneb.pqr file
apbs/apbs-3.0.0/examples/bem/test_proteins/twob.pqr file
apbs/apbs-3.0.0/examples/bem/test_proteins/twob2.pqr file
apbs/apbs-3.0.0/examples/bem-binding-energy directory
apbs/apbs-3.0.0/examples/bem-binding-energy/1d30.in file
apbs/apbs-3.0.0/examples/bem-binding-energy/1d30_monomer1.in file
apbs/apbs-3.0.0/examples/bem-binding-energy/1d30_monomer2.in file
apbs/apbs-3.0.0/examples/bem-binding-energy/README.md file
apbs/apbs-3.0.0/examples/bem-binding-energy/test_proteins directory
apbs/apbs-3.0.0/examples/bem-binding-energy/test_proteins/1d30.pqr file
apbs/apbs-3.0.0/examples/bem-binding-energy/test_proteins/1d30_monomer1.pqr file
apbs/apbs-3.0.0/examples/bem-binding-energy/test_proteins/1d30_monomer2.pqr file
apbs/apbs-3.0.0/examples/bem-pKa directory
apbs/apbs-3.0.0/examples/bem-pKa/2LZT-ASH66.in file
apbs/apbs-3.0.0/examples/bem-pKa/2LZT-ASP66.in file
apbs/apbs-3.0.0/examples/bem-pKa/2LZT-noASH66.in file
apbs/apbs-3.0.0/examples/bem-pKa/2LZT-noASP66.in file
apbs/apbs-3.0.0/examples/bem-pKa/ASH66.in file
apbs/apbs-3.0.0/examples/bem-pKa/ASP66.in file
apbs/apbs-3.0.0/examples/bem-pKa/README.md file
apbs/apbs-3.0.0/examples/bem-pKa/test_proteins directory
apbs/apbs-3.0.0/examples/bem-pKa/test_proteins/2LZT-ASH66.pqr file
apbs/apbs-3.0.0/examples/bem-pKa/test_proteins/2LZT-ASP66.pqr file
apbs/apbs-3.0.0/examples/bem-pKa/test_proteins/2LZT-noASH66.pqr file
apbs/apbs-3.0.0/examples/bem-pKa/test_proteins/2LZT-noASP66.pqr file
apbs/apbs-3.0.0/examples/bem-pKa/test_proteins/ASH66.pqr file
apbs/apbs-3.0.0/examples/bem-pKa/test_proteins/ASP66.pqr file
apbs/apbs-3.0.0/examples/born directory
apbs/apbs-3.0.0/examples/born/apbs-apolar.in file
apbs/apbs-3.0.0/examples/born/apbs-forces.in file
apbs/apbs-3.0.0/examples/born/apbs-mol-auto.in file
apbs/apbs-3.0.0/examples/born/apbs-mol-fem-extmesh.in file
apbs/apbs-3.0.0/examples/born/apbs-mol-fem.in file
apbs/apbs-3.0.0/examples/born/apbs-mol-parallel.in file
apbs/apbs-3.0.0/examples/born/apbs-smol-auto.in file
apbs/apbs-3.0.0/examples/born/apbs-smol-fem.in file
apbs/apbs-3.0.0/examples/born/apbs-smol-parallel.in file
apbs/apbs-3.0.0/examples/born/apolarforces file
apbs/apbs-3.0.0/examples/born/ion.pqr file
apbs/apbs-3.0.0/examples/born/ion.xml file
apbs/apbs-3.0.0/examples/born/mesh.m file
apbs/apbs-3.0.0/examples/born/parm.dat file
apbs/apbs-3.0.0/examples/born/pmf.dat file
apbs/apbs-3.0.0/examples/born/polarforces file
apbs/apbs-3.0.0/examples/born/README.md file
apbs/apbs-3.0.0/examples/FKBP directory
apbs/apbs-3.0.0/examples/FKBP/1d7h-dmso-complex.pqr file
apbs/apbs-3.0.0/examples/FKBP/1d7h-dmso-mol.in file
apbs/apbs-3.0.0/examples/FKBP/1d7h-dmso-smol.in file
apbs/apbs-3.0.0/examples/FKBP/1d7h-min.pqr file
apbs/apbs-3.0.0/examples/FKBP/1d7i-dss-complex.pqr file
apbs/apbs-3.0.0/examples/FKBP/1d7i-dss-mol.in file
apbs/apbs-3.0.0/examples/FKBP/1d7i-dss-smol.in file
apbs/apbs-3.0.0/examples/FKBP/1d7i-min.pqr file
apbs/apbs-3.0.0/examples/FKBP/dmso-min.pqr file
apbs/apbs-3.0.0/examples/FKBP/dss-min.pqr file
apbs/apbs-3.0.0/examples/FKBP/README.md file
apbs/apbs-3.0.0/examples/FKBP/1d7h-dmso directory
apbs/apbs-3.0.0/examples/FKBP/1d7h-dmso/UHBD directory
apbs/apbs-3.0.0/examples/FKBP/1d7h-dmso/UHBD/1d7h-min.qcd file
apbs/apbs-3.0.0/examples/FKBP/1d7h-dmso/UHBD/bindf.inp file
apbs/apbs-3.0.0/examples/FKBP/1d7h-dmso/UHBD/bindf.log file
apbs/apbs-3.0.0/examples/FKBP/1d7h-dmso/UHBD/bindf.oldlog file
apbs/apbs-3.0.0/examples/FKBP/1d7h-dmso/UHBD/dmso-min.qcd file
apbs/apbs-3.0.0/examples/FKBP/1d7h-dmso/UHBD/pqr2qcd file
apbs/apbs-3.0.0/examples/FKBP/1d7i-dss directory
apbs/apbs-3.0.0/examples/FKBP/1d7i-dss/UHBD directory
apbs/apbs-3.0.0/examples/FKBP/1d7i-dss/UHBD/1d7i-min.qcd file
apbs/apbs-3.0.0/examples/FKBP/1d7i-dss/UHBD/bindf.inp file
apbs/apbs-3.0.0/examples/FKBP/1d7i-dss/UHBD/bindf.log file
apbs/apbs-3.0.0/examples/FKBP/1d7i-dss/UHBD/dss-min.qcd file
apbs/apbs-3.0.0/examples/geoflow directory
apbs/apbs-3.0.0/examples/geoflow/1a63.in file
apbs/apbs-3.0.0/examples/geoflow/1a63.pqr file
apbs/apbs-3.0.0/examples/geoflow/gly.pdb file
apbs/apbs-3.0.0/examples/geoflow/gly.pqr file
apbs/apbs-3.0.0/examples/geoflow/glycerol.in file
apbs/apbs-3.0.0/examples/geoflow/imidazole.in file
apbs/apbs-3.0.0/examples/geoflow/imidazole_zap.pqr file
apbs/apbs-3.0.0/examples/geoflow/README.md file
apbs/apbs-3.0.0/examples/hca-bind directory
apbs/apbs-3.0.0/examples/hca-bind/acet.pqr file
apbs/apbs-3.0.0/examples/hca-bind/apbs-mol.in file
apbs/apbs-3.0.0/examples/hca-bind/apbs-smol.in file
apbs/apbs-3.0.0/examples/hca-bind/complex.pqr file
apbs/apbs-3.0.0/examples/hca-bind/hca.pqr file
apbs/apbs-3.0.0/examples/hca-bind/mesh.m file
apbs/apbs-3.0.0/examples/hca-bind/README.md file
apbs/apbs-3.0.0/examples/hca-bind/UHBD directory
apbs/apbs-3.0.0/examples/hca-bind/UHBD/bindf-nmap.err file
apbs/apbs-3.0.0/examples/hca-bind/UHBD/bindf-nmap.inp file
apbs/apbs-3.0.0/examples/hca-bind/UHBD/bindf-nmap.out file
apbs/apbs-3.0.0/examples/hca-bind/UHBD/bindf.inp file
apbs/apbs-3.0.0/examples/hca-bind/UHBD/bindf.log file
apbs/apbs-3.0.0/examples/hca-bind/UHBD/bindf.out.orig file
apbs/apbs-3.0.0/examples/hca-bind/UHBD/bindf1.qcd file
apbs/apbs-3.0.0/examples/hca-bind/UHBD/bindf2.err file
apbs/apbs-3.0.0/examples/hca-bind/UHBD/bindf2.qcd file
apbs/apbs-3.0.0/examples/hca-bind/UHBD/srsrf.dot file
apbs/apbs-3.0.0/examples/helix directory
apbs/apbs-3.0.0/examples/helix/Apbs_dummy-TEMPLATE.in file
apbs/apbs-3.0.0/examples/helix/Apbs_dummy.in file
apbs/apbs-3.0.0/examples/helix/Apbs_solv-TEMPLATE.in file
apbs/apbs-3.0.0/examples/helix/draw_membrane2.c file
apbs/apbs-3.0.0/examples/helix/Membrane-helix-0.pqr file
apbs/apbs-3.0.0/examples/helix/Membrane-helix-12.pqr file
apbs/apbs-3.0.0/examples/helix/Membrane-helix-16.pqr file
apbs/apbs-3.0.0/examples/helix/Membrane-helix-4.pqr file
apbs/apbs-3.0.0/examples/helix/Membrane-helix-8.pqr file
apbs/apbs-3.0.0/examples/helix/Run_membrane-helix.sh file
apbs/apbs-3.0.0/examples/ion-pmf directory
apbs/apbs-3.0.0/examples/ion-pmf/apolarforces file
apbs/apbs-3.0.0/examples/ion-pmf/complex.in file
apbs/apbs-3.0.0/examples/ion-pmf/ion-pmf.in file
apbs/apbs-3.0.0/examples/ion-pmf/ion-pmf.pdb file
apbs/apbs-3.0.0/examples/ion-pmf/parm.dat file
apbs/apbs-3.0.0/examples/ion-pmf/polarforces file
apbs/apbs-3.0.0/examples/ion-pmf/README.md file
apbs/apbs-3.0.0/examples/ion-pmf/runme.sh file
apbs/apbs-3.0.0/examples/ion-protein directory
apbs/apbs-3.0.0/examples/ion-protein/491.pqr file
apbs/apbs-3.0.0/examples/ion-protein/apbs-mol-pdiel12.in file
apbs/apbs-3.0.0/examples/ion-protein/apbs-mol-pdiel2.in file
apbs/apbs-3.0.0/examples/ion-protein/apbs-smol-pdiel12.in file
apbs/apbs-3.0.0/examples/ion-protein/apbs-smol-pdiel2.in file
apbs/apbs-3.0.0/examples/ion-protein/complex.pqr file
apbs/apbs-3.0.0/examples/ion-protein/README.md file
apbs/apbs-3.0.0/examples/ion-protein/small491.pqr file
apbs/apbs-3.0.0/examples/ion-protein/UHBD directory
apbs/apbs-3.0.0/examples/ion-protein/UHBD/491.pdb file
apbs/apbs-3.0.0/examples/ion-protein/UHBD/small491.e2.log file
apbs/apbs-3.0.0/examples/ion-protein/UHBD/small491.inp file
apbs/apbs-3.0.0/examples/ion-protein/UHBD/small491.log file
apbs/apbs-3.0.0/examples/ion-protein/UHBD/small491.pdb file
apbs/apbs-3.0.0/examples/ionize directory
apbs/apbs-3.0.0/examples/ionize/acetate.pqr file
apbs/apbs-3.0.0/examples/ionize/acetate.xml file
apbs/apbs-3.0.0/examples/ionize/acetic-acid.pqr file
apbs/apbs-3.0.0/examples/ionize/acetic-acid.xml file
apbs/apbs-3.0.0/examples/ionize/apbs-mol.in file
apbs/apbs-3.0.0/examples/ionize/apbs-smol.in file
apbs/apbs-3.0.0/examples/ionize/proton.pqr file
apbs/apbs-3.0.0/examples/ionize/proton.xml file
apbs/apbs-3.0.0/examples/ionize/README.md file
apbs/apbs-3.0.0/examples/ionize/UHBD directory
apbs/apbs-3.0.0/examples/ionize/UHBD/elec.dat.exam file
apbs/apbs-3.0.0/examples/ionize/UHBD/elec.inp.exam file
apbs/apbs-3.0.0/examples/ionize/UHBD/elec.out.orig.exam file
apbs/apbs-3.0.0/examples/ionize/UHBD/elec.pdb.exam file
apbs/apbs-3.0.0/examples/membrane directory
apbs/apbs-3.0.0/examples/membrane/memv.in file
apbs/apbs-3.0.0/examples/membrane/pot.pqr file
apbs/apbs-3.0.0/examples/membrane/readme.md file
apbs/apbs-3.0.0/examples/misc directory
apbs/apbs-3.0.0/examples/misc/achbp.pqr file
apbs/apbs-3.0.0/examples/misc/apbs-PDB.in file
apbs/apbs-3.0.0/examples/misc/apbs.in file
apbs/apbs-3.0.0/examples/misc/fas2.pqr file
apbs/apbs-3.0.0/examples/misc/mache.pqr file
apbs/apbs-3.0.0/examples/misc/param.dat file
apbs/apbs-3.0.0/examples/misc/README.md file
apbs/apbs-3.0.0/examples/opal directory
apbs/apbs-3.0.0/examples/opal/actin-complex.pqr file
apbs/apbs-3.0.0/examples/opal/actin-dimer-para.in file
apbs/apbs-3.0.0/examples/opal/actin-dimer.in file
apbs/apbs-3.0.0/examples/opal/actin-mol1.pqr file
apbs/apbs-3.0.0/examples/opal/actin-mol2.pqr file
apbs/apbs-3.0.0/examples/opal/born.xml file
apbs/apbs-3.0.0/examples/opal/README.md file
apbs/apbs-3.0.0/examples/pbam directory
apbs/apbs-3.0.0/examples/pbam/1a63.in file
apbs/apbs-3.0.0/examples/pbam/1a63.pqr file
apbs/apbs-3.0.0/examples/pbam/neg_1.xyz file
apbs/apbs-3.0.0/examples/pbam/neg_2.xyz file
apbs/apbs-3.0.0/examples/pbam/neg_3.xyz file
apbs/apbs-3.0.0/examples/pbam/neg_charge.pqr file
apbs/apbs-3.0.0/examples/pbam/pos_1.xyz file
apbs/apbs-3.0.0/examples/pbam/pos_2.xyz file
apbs/apbs-3.0.0/examples/pbam/pos_3.xyz file
apbs/apbs-3.0.0/examples/pbam/pos_charge.pqr file
apbs/apbs-3.0.0/examples/pbam/README.md file
apbs/apbs-3.0.0/examples/pbam/toy_dynamics.in file
apbs/apbs-3.0.0/examples/pbam/toy_electrostatic.in file
apbs/apbs-3.0.0/examples/pbam/toy_energyforce.in file
apbs/apbs-3.0.0/examples/pbsam-barn_bars directory
apbs/apbs-3.0.0/examples/pbsam-barn_bars/barn_bars_electro.in file
apbs/apbs-3.0.0/examples/pbsam-barn_bars/barnase.pqr file
apbs/apbs-3.0.0/examples/pbsam-barn_bars/barstar.pqr file
apbs/apbs-3.0.0/examples/pbsam-gly directory
apbs/apbs-3.0.0/examples/pbsam-gly/gly.pqr file
apbs/apbs-3.0.0/examples/pbsam-gly/gly.vert file
apbs/apbs-3.0.0/examples/pbsam-gly/gly_cg.pqr file
apbs/apbs-3.0.0/examples/pbsam-gly/gly_cg2.pqr file
apbs/apbs-3.0.0/examples/pbsam-gly/gly_dynamics.in file
apbs/apbs-3.0.0/examples/pbsam-gly/gly_electrostatic.in file
apbs/apbs-3.0.0/examples/pbsam-gly/gly_energyforce.in file
apbs/apbs-3.0.0/examples/pbsam-gly/README.md file
apbs/apbs-3.0.0/examples/pbsam-gly/traj_1_1.xyz file
apbs/apbs-3.0.0/examples/pbsam-gly/traj_1_2.xyz file
apbs/apbs-3.0.0/examples/pbsam-gly/traj_2_1.xyz file
apbs/apbs-3.0.0/examples/pbsam-gly/traj_2_2.xyz file
apbs/apbs-3.0.0/examples/pbsam-gly/msms directory
apbs/apbs-3.0.0/examples/pbsam-gly/msms/gly_electrostatic.in file
apbs/apbs-3.0.0/examples/pbsam-gly/msms/gly_msms.pqr file
apbs/apbs-3.0.0/examples/pka-lig directory
apbs/apbs-3.0.0/examples/pka-lig/apbs-mol-surf.in file
apbs/apbs-3.0.0/examples/pka-lig/apbs-mol-vdw.in file
apbs/apbs-3.0.0/examples/pka-lig/apbs-smol-surf.in file
apbs/apbs-3.0.0/examples/pka-lig/apbs-smol-vdw.in file
apbs/apbs-3.0.0/examples/pka-lig/bx6_7_apo_apbs.pqr file
apbs/apbs-3.0.0/examples/pka-lig/bx6_7_bin_apbs.pqr file
apbs/apbs-3.0.0/examples/pka-lig/bx6_7_lig_apbs.pqr file
apbs/apbs-3.0.0/examples/pka-lig/README.md file
apbs/apbs-3.0.0/examples/pka-lig/UHBD directory
apbs/apbs-3.0.0/examples/pka-lig/UHBD/README file
apbs/apbs-3.0.0/examples/pka-lig/UHBD/uhbd1-apo.out file
apbs/apbs-3.0.0/examples/pka-lig/UHBD/uhbd1-bin.out file
apbs/apbs-3.0.0/examples/pka-lig/UHBD/uhbd1-lig.out file
apbs/apbs-3.0.0/examples/pka-lig/UHBD/uhbd2-apo.out file
apbs/apbs-3.0.0/examples/pka-lig/UHBD/uhbd2-bin.out file
apbs/apbs-3.0.0/examples/pka-lig/UHBD/uhbd2-lig.out file
apbs/apbs-3.0.0/examples/point-pmf directory
apbs/apbs-3.0.0/examples/point-pmf/apbs.in file
apbs/apbs-3.0.0/examples/point-pmf/complex-0_1.in file
apbs/apbs-3.0.0/examples/point-pmf/complex-0_1.pqr file
apbs/apbs-3.0.0/examples/point-pmf/complex-0_2.in file
apbs/apbs-3.0.0/examples/point-pmf/complex-0_2.pqr file
apbs/apbs-3.0.0/examples/point-pmf/complex-0_3.in file
apbs/apbs-3.0.0/examples/point-pmf/complex-0_3.pqr file
apbs/apbs-3.0.0/examples/point-pmf/complex-0_4.in file
apbs/apbs-3.0.0/examples/point-pmf/complex-0_4.pqr file
apbs/apbs-3.0.0/examples/point-pmf/energy.dat file
apbs/apbs-3.0.0/examples/point-pmf/mol0.pqr file
apbs/apbs-3.0.0/examples/point-pmf/mol1.pqr file
apbs/apbs-3.0.0/examples/point-pmf/mol2.pqr file
apbs/apbs-3.0.0/examples/point-pmf/mol3.pqr file
apbs/apbs-3.0.0/examples/point-pmf/mol4.pqr file
apbs/apbs-3.0.0/examples/point-pmf/point-pmf-0.in file
apbs/apbs-3.0.0/examples/point-pmf/README.md file
apbs/apbs-3.0.0/examples/point-pmf/runme.sh file
apbs/apbs-3.0.0/examples/protein-rna directory
apbs/apbs-3.0.0/examples/protein-rna/apbs_dx.py file
apbs/apbs-3.0.0/examples/protein-rna/dxmath.txt file
apbs/apbs-3.0.0/examples/protein-rna/fit.py file
apbs/apbs-3.0.0/examples/protein-rna/Makefile.am file
apbs/apbs-3.0.0/examples/protein-rna/Makefile.in file
apbs/apbs-3.0.0/examples/protein-rna/model_outBoxB19.pqr file
apbs/apbs-3.0.0/examples/protein-rna/model_outNB.pqr file
apbs/apbs-3.0.0/examples/protein-rna/model_outNpep.pqr file
apbs/apbs-3.0.0/examples/protein-rna/postprocess.sh file
apbs/apbs-3.0.0/examples/protein-rna/README.md file
apbs/apbs-3.0.0/examples/protein-rna/run_apdx_files.sh file
apbs/apbs-3.0.0/examples/protein-rna/template.txt file
apbs/apbs-3.0.0/examples/protein-rna/test.sh file
apbs/apbs-3.0.0/examples/protein-rna/PDB directory
apbs/apbs-3.0.0/examples/protein-rna/PDB/model_outBoxB19.pdb file
apbs/apbs-3.0.0/examples/protein-rna/PDB/model_outNB.pdb file
apbs/apbs-3.0.0/examples/protein-rna/PDB/model_outNpep.pdb file
apbs/apbs-3.0.0/examples/smpbe directory
apbs/apbs-3.0.0/examples/smpbe/24dup.pqr file
apbs/apbs-3.0.0/examples/smpbe/apbs-smpbe-24dup.in file
apbs/apbs-3.0.0/examples/smpbe/apbs-smpbe-ion.in file
apbs/apbs-3.0.0/examples/smpbe/ion.pqr file
apbs/apbs-3.0.0/examples/smpbe/readme.md file
apbs/apbs-3.0.0/examples/solv directory
apbs/apbs-3.0.0/examples/solv/apbs-mol.in file
apbs/apbs-3.0.0/examples/solv/apbs-smol.in file
apbs/apbs-3.0.0/examples/solv/Makefile.am file
apbs/apbs-3.0.0/examples/solv/Makefile.in file
apbs/apbs-3.0.0/examples/solv/methanol.pqr file
apbs/apbs-3.0.0/examples/solv/methoxide.pqr file
apbs/apbs-3.0.0/examples/solv/README.md file
apbs/apbs-3.0.0/examples/solv/UHBD directory
apbs/apbs-3.0.0/examples/solv/UHBD/solv.dat.exam file
apbs/apbs-3.0.0/examples/solv/UHBD/solv.inp.exam file
apbs/apbs-3.0.0/examples/solv/UHBD/solv.out.orig.exam file
apbs/apbs-3.0.0/externals directory
apbs/apbs-3.0.0/externals/bem directory
apbs/apbs-3.0.0/externals/fetk directory
apbs/apbs-3.0.0/externals/geoflow_c directory
apbs/apbs-3.0.0/externals/mesh_routines directory
apbs/apbs-3.0.0/externals/pb_s_am directory
apbs/apbs-3.0.0/externals/README.md file
apbs/apbs-3.0.0/externals/boost directory
apbs/apbs-3.0.0/externals/boost/CMakeLists.txt file
apbs/apbs-3.0.0/include directory
apbs/apbs-3.0.0/include/Eigen directory
apbs/apbs-3.0.0/include/Eigen/Array file
apbs/apbs-3.0.0/include/Eigen/Cholesky file
apbs/apbs-3.0.0/include/Eigen/CholmodSupport file
apbs/apbs-3.0.0/include/Eigen/CMakeLists.txt file
apbs/apbs-3.0.0/include/Eigen/Core file
apbs/apbs-3.0.0/include/Eigen/Dense file
apbs/apbs-3.0.0/include/Eigen/Eigen file
apbs/apbs-3.0.0/include/Eigen/Eigen2Support file
apbs/apbs-3.0.0/include/Eigen/Eigenvalues file
apbs/apbs-3.0.0/include/Eigen/Geometry file
apbs/apbs-3.0.0/include/Eigen/Householder file
apbs/apbs-3.0.0/include/Eigen/IterativeLinearSolvers file
apbs/apbs-3.0.0/include/Eigen/Jacobi file
apbs/apbs-3.0.0/include/Eigen/LeastSquares file
apbs/apbs-3.0.0/include/Eigen/LU file
apbs/apbs-3.0.0/include/Eigen/MetisSupport file
apbs/apbs-3.0.0/include/Eigen/OrderingMethods file
apbs/apbs-3.0.0/include/Eigen/PardisoSupport file
apbs/apbs-3.0.0/include/Eigen/PaStiXSupport file
apbs/apbs-3.0.0/include/Eigen/QR file
apbs/apbs-3.0.0/include/Eigen/QtAlignedMalloc file
apbs/apbs-3.0.0/include/Eigen/Sparse file
apbs/apbs-3.0.0/include/Eigen/SparseCholesky file
apbs/apbs-3.0.0/include/Eigen/SparseCore file
apbs/apbs-3.0.0/include/Eigen/SparseLU file
apbs/apbs-3.0.0/include/Eigen/SparseQR file
apbs/apbs-3.0.0/include/Eigen/SPQRSupport file
apbs/apbs-3.0.0/include/Eigen/StdDeque file
apbs/apbs-3.0.0/include/Eigen/StdList file
apbs/apbs-3.0.0/include/Eigen/StdVector file
apbs/apbs-3.0.0/include/Eigen/SuperLUSupport file
apbs/apbs-3.0.0/include/Eigen/SVD file
apbs/apbs-3.0.0/include/Eigen/UmfPackSupport file
apbs/apbs-3.0.0/include/Eigen/src directory
apbs/apbs-3.0.0/include/Eigen/src/CMakeLists.txt file
apbs/apbs-3.0.0/include/Eigen/src/Cholesky directory
apbs/apbs-3.0.0/include/Eigen/src/Cholesky/CMakeLists.txt file
apbs/apbs-3.0.0/include/Eigen/src/Cholesky/LDLT.h file
apbs/apbs-3.0.0/include/Eigen/src/Cholesky/LLT.h file
apbs/apbs-3.0.0/include/Eigen/src/Cholesky/LLT_MKL.h file
apbs/apbs-3.0.0/include/Eigen/src/CholmodSupport directory
apbs/apbs-3.0.0/include/Eigen/src/CholmodSupport/CholmodSupport.h file
apbs/apbs-3.0.0/include/Eigen/src/CholmodSupport/CMakeLists.txt file
apbs/apbs-3.0.0/include/Eigen/src/Core directory
apbs/apbs-3.0.0/include/Eigen/src/Core/Array.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/ArrayBase.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/ArrayWrapper.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Assign.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Assign_MKL.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/BandMatrix.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Block.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/BooleanRedux.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/CMakeLists.txt file
apbs/apbs-3.0.0/include/Eigen/src/Core/CommaInitializer.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/CoreIterators.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/CwiseBinaryOp.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/CwiseNullaryOp.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/CwiseUnaryOp.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/CwiseUnaryView.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/DenseBase.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/DenseCoeffsBase.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/DenseStorage.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Diagonal.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/DiagonalMatrix.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/DiagonalProduct.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Dot.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/EigenBase.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Flagged.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/ForceAlignedAccess.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Functors.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Fuzzy.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/GeneralProduct.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/GenericPacketMath.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/GlobalFunctions.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/IO.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Map.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/MapBase.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/MathFunctions.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Matrix.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/MatrixBase.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/NestByValue.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/NoAlias.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/NumTraits.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/PermutationMatrix.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/PlainObjectBase.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/ProductBase.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Random.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Redux.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Ref.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Replicate.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/ReturnByValue.h file
apbs/apbs-3.0.0/include/Eigen/src/Core/Reverse.h file
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apbs/apbs-3.0.0/include/Eigen/src/Householder directory
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apbs/apbs-3.0.0/include/Eigen/src/IterativeLinearSolvers directory
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apbs/apbs-3.0.0/include/Eigen/src/Jacobi directory
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apbs/apbs-3.0.0/include/Eigen/src/OrderingMethods directory
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apbs/apbs-3.0.0/include/Eigen/src/plugins directory
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apbs/apbs-3.0.0/include/Eigen/src/QR directory
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apbs/apbs-3.0.0/include/Eigen/src/SparseCholesky directory
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apbs/apbs-3.0.0/include/Eigen/src/SparseCore directory
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apbs/apbs-3.0.0/tools/manip directory
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apbs/apbs-3.0.0/tools/matlab directory
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apbs/apbs-3.0.0/tools/matlab/solver/Examples/DNA directory
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apbs/apbs-3.0.0/tools/matlab/solver/Examples/pka directory
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apbs/apbs-3.0.0/tools/matlab/solver/Examples/pka/kinase directory
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apbs/apbs-3.0.0/tools/matlab/solver/Examples/pka/ligand directory
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apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/BoundaryCondition.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/BuildA.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/centerofgrid.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/comparison_pot.fig file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/comparison_pot.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/data_parse.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/discretization.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/dx_export.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/energy.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/fbc.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/gridinf.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/MAPBS.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/mapbs_comparison.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS.fig file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS_FOCUS.fig file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_APBS_FOCUS.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/MATLAB_PB_SOLVER_AND_GUI.pdf file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/parameters.m file
apbs/apbs-3.0.0/tools/matlab/solver/MATLAB_PB_SOLVER_7/read_inm.m file
apbs/apbs-3.0.0/tools/mesh directory
apbs/apbs-3.0.0/tools/mesh/analysis.c file
apbs/apbs-3.0.0/tools/mesh/benchmark.c file
apbs/apbs-3.0.0/tools/mesh/CMakeLists.txt file
apbs/apbs-3.0.0/tools/mesh/CMakeLists.txt.apbs-cmake file
apbs/apbs-3.0.0/tools/mesh/del2dx.c file
apbs/apbs-3.0.0/tools/mesh/dx2mol.c file
apbs/apbs-3.0.0/tools/mesh/dx2uhbd.c file
apbs/apbs-3.0.0/tools/mesh/dxmath.c file
apbs/apbs-3.0.0/tools/mesh/mergedx.c file
apbs/apbs-3.0.0/tools/mesh/mergedx2.c file
apbs/apbs-3.0.0/tools/mesh/mgmesh.c file
apbs/apbs-3.0.0/tools/mesh/multivalue.c file
apbs/apbs-3.0.0/tools/mesh/similarity.c file
apbs/apbs-3.0.0/tools/mesh/smooth.c file
apbs/apbs-3.0.0/tools/mesh/tensor2dx.c file
apbs/apbs-3.0.0/tools/mesh/uhbd_asc2bin.c file
apbs/apbs-3.0.0/tools/mesh/value.c file
apbs/apbs-3.0.0/tools/osx directory
apbs/apbs-3.0.0/tools/osx/apbs_term file
apbs/apbs-3.0.0/tools/osx/info.plist file
apbs/apbs-3.0.0/tools/osx/patch_binary.sh file
apbs/apbs-3.0.0/tools/osx/APBS.iconset directory
apbs/apbs-3.0.0/tools/osx/APBS.iconset/icon_128x128.png file
apbs/apbs-3.0.0/tools/osx/APBS.iconset/icon_128x128@2x.png file
apbs/apbs-3.0.0/tools/osx/APBS.iconset/icon_16x16.png file
apbs/apbs-3.0.0/tools/osx/APBS.iconset/icon_16x16@2x.png file
apbs/apbs-3.0.0/tools/osx/APBS.iconset/icon_256x256.png file
apbs/apbs-3.0.0/tools/osx/APBS.iconset/icon_256x256@2x.png file
apbs/apbs-3.0.0/tools/osx/APBS.iconset/icon_32x32.png file
apbs/apbs-3.0.0/tools/osx/APBS.iconset/icon_32x32@2x.png file
apbs/apbs-3.0.0/tools/osx/APBS.iconset/icon_512x512.png file
apbs/apbs-3.0.0/tools/osx/APBS.iconset/icon_512x512@2x.png file
apbs/apbs-3.0.0/tools/python directory
apbs/apbs-3.0.0/tools/python/apbs.in file
apbs/apbs-3.0.0/tools/python/apbslib.c file
apbs/apbs-3.0.0/tools/python/apbslib.i file
apbs/apbs-3.0.0/tools/python/apbslib_wrap.doc file
apbs/apbs-3.0.0/tools/python/CMakeLists.txt file
apbs/apbs-3.0.0/tools/python/ion.pqr file
apbs/apbs-3.0.0/tools/python/main.py file
apbs/apbs-3.0.0/tools/python/Makefile file
apbs/apbs-3.0.0/tools/python/Makefile.am file
apbs/apbs-3.0.0/tools/python/Makefile.in file
apbs/apbs-3.0.0/tools/python/noinput.py file
apbs/apbs-3.0.0/tools/python/README file
apbs/apbs-3.0.0/tools/python/vgrid directory
apbs/apbs-3.0.0/tools/python/vgrid/average.py file
apbs/apbs-3.0.0/tools/python/vgrid/Makefile file
apbs/apbs-3.0.0/tools/python/vgrid/Makefile.am file
apbs/apbs-3.0.0/tools/python/vgrid/Makefile.in file
apbs/apbs-3.0.0/tools/python/vgrid/mergedx.py file
apbs/apbs-3.0.0/tools/python/vgrid/read.py file
apbs/apbs-3.0.0/tools/python/vgrid/README file
apbs/apbs-3.0.0/tools/python/vgrid/vgrid.i file
apbs/apbs-3.0.0/tools/python/vgrid/vgrid.py file
apbs/apbs-3.0.0/tools/python/vgrid/vgridlib.c file
apbs/apbs-3.0.0/tools/visualization directory
apbs/apbs-3.0.0/tools/visualization/opendx directory
apbs/apbs-3.0.0/tools/visualization/opendx/multipot.cfg file
apbs/apbs-3.0.0/tools/visualization/opendx/multipot.net file
apbs/apbs-3.0.0/tools/visualization/opendx/pot.cfg file
apbs/apbs-3.0.0/tools/visualization/opendx/pot.cm file
apbs/apbs-3.0.0/tools/visualization/opendx/pot.net file
apbs/apbs-3.0.0/tools/visualization/opendx/potacc.cfg file
apbs/apbs-3.0.0/tools/visualization/opendx/potacc.cm file
apbs/apbs-3.0.0/tools/visualization/opendx/potacc.net file
apbs/apbs-3.0.0/tools/visualization/opendx/surface.cfg file
apbs/apbs-3.0.0/tools/visualization/opendx/surface.net file
apbs/apbs-3.0.0/tools/windows directory
apbs/apbs-3.0.0/tools/windows/README.txt file
apbs/apbs-3.0.0/tools/windows/command-line support directory
apbs/apbs-3.0.0/tools/windows/command-line support/apbs-cli.bat file
apbs/apbs-3.0.0/tools/windows/configuration headers directory
apbs/apbs-3.0.0/tools/windows/configuration headers/apbscfg.h file
apbs/apbs-3.0.0/tools/windows/configuration headers/maloccf.h file
apbs/apbs-3.0.0/tools/windows/NSI configuration directory
apbs/apbs-3.0.0/tools/windows/NSI configuration/apbs.nsi file
apbs/apbs-3.0.0/tools/windows/visual studio property pages directory
apbs/apbs-3.0.0/tools/windows/visual studio property pages/Debug build properties.props file
apbs/apbs-3.0.0/tools/windows/visual studio property pages/Generic build properties.props file
apbs/apbs-3.0.0/tools/windows/visual studio property pages/Release build properties.props file
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Authors
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