Copyrights and Licenses Information
path start end what value
bowtie/bowtie.spec 6 6 license artistic-2.0
bowtie/bowtie.spec 7 8 license zlib
bowtie/bowtie.spec 8 8 license artistic-2.0
bowtie/bowtie-1.3.1-src/bowtie 8 19 license gpl-3.0-plus
bowtie/bowtie-1.3.1-src/bowtie-build 8 19 license gpl-3.0-plus
bowtie/bowtie-1.3.1-src/bowtie-inspect 8 19 license gpl-3.0-plus
bowtie/bowtie-1.3.1-src/ds.h 6 17 license gpl-3.0-plus
bowtie/bowtie-1.3.1-src/fast_mutex.h 4 21 license zlib
bowtie/bowtie-1.3.1-src/filebuf.h 6 17 license gpl-3.0-plus
bowtie/bowtie-1.3.1-src/LICENSE 1 73 license artistic-2.0
bowtie/bowtie-1.3.1-src/ls.cpp 6 17 license gpl-3.0-plus
bowtie/bowtie-1.3.1-src/ls.h 6 17 license gpl-3.0-plus
bowtie/bowtie-1.3.1-src/ls.h 32 32 license warranty-disclaimer
bowtie/bowtie-1.3.1-src/mem_ids.h 6 17 license gpl-3.0-plus
bowtie/bowtie-1.3.1-src/NEWS 1 73 license artistic-2.0
bowtie/bowtie-1.3.1-src/NEWS 7 7 license artistic-2.0
bowtie/bowtie-1.3.1-src/NEWS 7 7 license unknown-license-reference
bowtie/bowtie-1.3.1-src/NEWS 80 80 license artistic-2.0
bowtie/bowtie-1.3.1-src/NEWS 80 80 license unknown-license-reference
bowtie/bowtie-1.3.1-src/NEWS 92 92 license artistic-2.0
bowtie/bowtie-1.3.1-src/NEWS 686 687 license lgpl-2.0-plus
bowtie/bowtie-1.3.1-src/NEWS 687 687 license lgpl-2.0-plus
bowtie/bowtie-1.3.1-src/read.h 6 17 license gpl-3.0-plus
bowtie/bowtie-1.3.1-src/sstring.h 6 17 license gpl-3.0-plus
bowtie/bowtie-1.3.1-src/tinythread.cpp 4 21 license zlib
bowtie/bowtie-1.3.1-src/tinythread.h 4 21 license zlib
bowtie/bowtie-1.3.1-src/util.h 6 17 license gpl-3.0-plus
File Information
path type name extension date size sha1 md5 files_count mime_type file_type programming_language is_binary is_text is_archive is_media is_source is_script
bowtie directory
bowtie/bowtie-1.3.1-src-SPECPARTS directory
bowtie/bowtie-1.3.1-src.zip file
bowtie/bowtie-1.3.1-tests.tgz file
bowtie/bowtie-test-remove-perl-Sys-Info-dep.patch file
bowtie/bowtie.spec file
bowtie/sources file
bowtie/bowtie-1.3.1-src directory
bowtie/bowtie-1.3.1-src/aligner.h file
bowtie/bowtie-1.3.1-src/aligner_0mm.h file
bowtie/bowtie-1.3.1-src/aligner_1mm.h file
bowtie/bowtie-1.3.1-src/aligner_23mm.h file
bowtie/bowtie-1.3.1-src/aligner_metrics.h file
bowtie/bowtie-1.3.1-src/aligner_seed_mm.h file
bowtie/bowtie-1.3.1-src/alphabet.cpp file
bowtie/bowtie-1.3.1-src/alphabet.h file
bowtie/bowtie-1.3.1-src/assert_helpers.h file
bowtie/bowtie-1.3.1-src/AUTHORS file
bowtie/bowtie-1.3.1-src/binary_sa_search.h file
bowtie/bowtie-1.3.1-src/bitpack.h file
bowtie/bowtie-1.3.1-src/bitset.h file
bowtie/bowtie-1.3.1-src/blockwise_sa.h file
bowtie/bowtie-1.3.1-src/bowtie file
bowtie/bowtie-1.3.1-src/bowtie-build file
bowtie/bowtie-1.3.1-src/bowtie-inspect file
bowtie/bowtie-1.3.1-src/bowtie_build_main.cpp file
bowtie/bowtie-1.3.1-src/bowtie_inspect.cpp file
bowtie/bowtie-1.3.1-src/bowtie_main.cpp file
bowtie/bowtie-1.3.1-src/bt2_locks.cpp file
bowtie/bowtie-1.3.1-src/bt2_locks.h file
bowtie/bowtie-1.3.1-src/btypes.h file
bowtie/bowtie-1.3.1-src/ccnt_lut.cpp file
bowtie/bowtie-1.3.1-src/chaincat.cpp file
bowtie/bowtie-1.3.1-src/cpu_numa_info.cpp file
bowtie/bowtie-1.3.1-src/cpu_numa_info.h file
bowtie/bowtie-1.3.1-src/diff_sample.h file
bowtie/bowtie-1.3.1-src/ds.h file
bowtie/bowtie-1.3.1-src/ebwt.cpp file
bowtie/bowtie-1.3.1-src/ebwt.h file
bowtie/bowtie-1.3.1-src/ebwt_build.cpp file
bowtie/bowtie-1.3.1-src/ebwt_search.cpp file
bowtie/bowtie-1.3.1-src/ebwt_search.h file
bowtie/bowtie-1.3.1-src/ebwt_search_backtrack.h file
bowtie/bowtie-1.3.1-src/ebwt_search_util.cpp file
bowtie/bowtie-1.3.1-src/ebwt_search_util.h file
bowtie/bowtie-1.3.1-src/edit.cpp file
bowtie/bowtie-1.3.1-src/edit.h file
bowtie/bowtie-1.3.1-src/endian_swap.h file
bowtie/bowtie-1.3.1-src/fast_mutex.h file
bowtie/bowtie-1.3.1-src/filebuf.h file
bowtie/bowtie-1.3.1-src/formats.h file
bowtie/bowtie-1.3.1-src/hit.cpp file
bowtie/bowtie-1.3.1-src/hit.h file
bowtie/bowtie-1.3.1-src/hit_set.cpp file
bowtie/bowtie-1.3.1-src/hit_set.h file
bowtie/bowtie-1.3.1-src/LICENSE file
bowtie/bowtie-1.3.1-src/log.cpp file
bowtie/bowtie-1.3.1-src/log.h file
bowtie/bowtie-1.3.1-src/ls.cpp file
bowtie/bowtie-1.3.1-src/ls.h file
bowtie/bowtie-1.3.1-src/Makefile file
bowtie/bowtie-1.3.1-src/MANUAL file
bowtie/bowtie-1.3.1-src/MANUAL.markdown file
bowtie/bowtie-1.3.1-src/mem_ids.h file
bowtie/bowtie-1.3.1-src/mm.h file
bowtie/bowtie-1.3.1-src/multikey_qsort.h file
bowtie/bowtie-1.3.1-src/NEWS file
bowtie/bowtie-1.3.1-src/pat.cpp file
bowtie/bowtie-1.3.1-src/pat.h file
bowtie/bowtie-1.3.1-src/pool.h file
bowtie/bowtie-1.3.1-src/processor_support.h file
bowtie/bowtie-1.3.1-src/qual.cpp file
bowtie/bowtie-1.3.1-src/qual.h file
bowtie/bowtie-1.3.1-src/random_source.h file
bowtie/bowtie-1.3.1-src/random_test.cpp file
bowtie/bowtie-1.3.1-src/range.h file
bowtie/bowtie-1.3.1-src/range_cache.h file
bowtie/bowtie-1.3.1-src/range_chaser.h file
bowtie/bowtie-1.3.1-src/range_source.h file
bowtie/bowtie-1.3.1-src/read.h file
bowtie/bowtie-1.3.1-src/ref_aligner.cpp file
bowtie/bowtie-1.3.1-src/ref_aligner.h file
bowtie/bowtie-1.3.1-src/ref_read.cpp file
bowtie/bowtie-1.3.1-src/ref_read.h file
bowtie/bowtie-1.3.1-src/reference.h file
bowtie/bowtie-1.3.1-src/row_chaser.h file
bowtie/bowtie-1.3.1-src/sam.cpp file
bowtie/bowtie-1.3.1-src/sam.h file
bowtie/bowtie-1.3.1-src/search_1mm_phase1.c file
bowtie/bowtie-1.3.1-src/search_1mm_phase2.c file
bowtie/bowtie-1.3.1-src/search_23mm_phase1.c file
bowtie/bowtie-1.3.1-src/search_23mm_phase2.c file
bowtie/bowtie-1.3.1-src/search_23mm_phase3.c file
bowtie/bowtie-1.3.1-src/search_exact.c file
bowtie/bowtie-1.3.1-src/search_globals.h file
bowtie/bowtie-1.3.1-src/search_seeded_phase1.c file
bowtie/bowtie-1.3.1-src/search_seeded_phase2.c file
bowtie/bowtie-1.3.1-src/search_seeded_phase3.c file
bowtie/bowtie-1.3.1-src/search_seeded_phase4.c file
bowtie/bowtie-1.3.1-src/sequence_io.h file
bowtie/bowtie-1.3.1-src/shmem.cpp file
bowtie/bowtie-1.3.1-src/shmem.h file
bowtie/bowtie-1.3.1-src/sstring.h file
bowtie/bowtie-1.3.1-src/str_util.h file
bowtie/bowtie-1.3.1-src/threading.h file
bowtie/bowtie-1.3.1-src/timer.h file
bowtie/bowtie-1.3.1-src/tinythread.cpp file
bowtie/bowtie-1.3.1-src/tinythread.h file
bowtie/bowtie-1.3.1-src/tokenize.h file
bowtie/bowtie-1.3.1-src/TUTORIAL file
bowtie/bowtie-1.3.1-src/util.h file
bowtie/bowtie-1.3.1-src/VERSION file
bowtie/bowtie-1.3.1-src/word_io.h file
bowtie/bowtie-1.3.1-src/zbox.h file
bowtie/bowtie-1.3.1-src/doc directory
bowtie/bowtie-1.3.1-src/doc/manual.html file
bowtie/bowtie-1.3.1-src/doc/README file
bowtie/bowtie-1.3.1-src/doc/strip_markdown.pl file
bowtie/bowtie-1.3.1-src/doc/style.css file
bowtie/bowtie-1.3.1-src/genomes directory
bowtie/bowtie-1.3.1-src/genomes/NC_008253.fna file
bowtie/bowtie-1.3.1-src/indexes directory
bowtie/bowtie-1.3.1-src/indexes/e_coli.1.ebwt file
bowtie/bowtie-1.3.1-src/indexes/e_coli.2.ebwt file
bowtie/bowtie-1.3.1-src/indexes/e_coli.3.ebwt file
bowtie/bowtie-1.3.1-src/indexes/e_coli.4.ebwt file
bowtie/bowtie-1.3.1-src/indexes/e_coli.README file
bowtie/bowtie-1.3.1-src/indexes/e_coli.rev.1.ebwt file
bowtie/bowtie-1.3.1-src/indexes/e_coli.rev.2.ebwt file
bowtie/bowtie-1.3.1-src/reads directory
bowtie/bowtie-1.3.1-src/reads/e_coli_1000.fa file
bowtie/bowtie-1.3.1-src/reads/e_coli_1000.fq file
bowtie/bowtie-1.3.1-src/reads/e_coli_1000.raw file
bowtie/bowtie-1.3.1-src/reads/e_coli_10000snp.fa file
bowtie/bowtie-1.3.1-src/reads/e_coli_10000snp.fq file
bowtie/bowtie-1.3.1-src/reads/e_coli_1000_1.fa file
bowtie/bowtie-1.3.1-src/reads/e_coli_1000_1.fq file
bowtie/bowtie-1.3.1-src/reads/e_coli_1000_2.fa file
bowtie/bowtie-1.3.1-src/reads/e_coli_1000_2.fq file
bowtie/bowtie-1.3.1-src/reads/e_coli_1000_interleaved.fq file
bowtie/bowtie-1.3.1-src/scripts directory
bowtie/bowtie-1.3.1-src/scripts/best_verify.pl file
bowtie/bowtie-1.3.1-src/scripts/bowtie-hbb.sh file
bowtie/bowtie-1.3.1-src/scripts/bs_mapability.pl file
bowtie/bowtie-1.3.1-src/scripts/build_test.sh file
bowtie/bowtie-1.3.1-src/scripts/colorize_fasta.pl file
bowtie/bowtie-1.3.1-src/scripts/colorize_fastq.pl file
bowtie/bowtie-1.3.1-src/scripts/convert_quals.pl file
bowtie/bowtie-1.3.1-src/scripts/fastq_to_tabbed.pl file
bowtie/bowtie-1.3.1-src/scripts/gen_2b_occ_lookup.pl file
bowtie/bowtie-1.3.1-src/scripts/gen_dnamasks2colormask.pl file
bowtie/bowtie-1.3.1-src/scripts/gen_occ_lookup.pl file
bowtie/bowtie-1.3.1-src/scripts/gen_solqual_lookup.pl file
bowtie/bowtie-1.3.1-src/scripts/infer_fraglen.pl file
bowtie/bowtie-1.3.1-src/scripts/make_a_thaliana_tair.sh file
bowtie/bowtie-1.3.1-src/scripts/make_b_taurus_UMD3.sh file
bowtie/bowtie-1.3.1-src/scripts/make_c_elegans.sh file
bowtie/bowtie-1.3.1-src/scripts/make_canFam2.sh file
bowtie/bowtie-1.3.1-src/scripts/make_d_melanogaster.sh file
bowtie/bowtie-1.3.1-src/scripts/make_e_coli.sh file
bowtie/bowtie-1.3.1-src/scripts/make_galGal3.sh file
bowtie/bowtie-1.3.1-src/scripts/make_h_sapiens_ncbi36.sh file
bowtie/bowtie-1.3.1-src/scripts/make_h_sapiens_ncbi37.sh file
bowtie/bowtie-1.3.1-src/scripts/make_hg18.sh file
bowtie/bowtie-1.3.1-src/scripts/make_hg19.sh file
bowtie/bowtie-1.3.1-src/scripts/make_m_musculus_ncbi37.sh file
bowtie/bowtie-1.3.1-src/scripts/make_mm8.sh file
bowtie/bowtie-1.3.1-src/scripts/make_mm9.sh file
bowtie/bowtie-1.3.1-src/scripts/make_rn4.sh file
bowtie/bowtie-1.3.1-src/scripts/make_s_cerevisiae.sh file
bowtie/bowtie-1.3.1-src/scripts/mapability.pl file
bowtie/bowtie-1.3.1-src/scripts/pe_verify.pl file
bowtie/bowtie-1.3.1-src/scripts/reconcile_alignments.pl file
bowtie/bowtie-1.3.1-src/scripts/reconcile_alignments_pe.pl file
bowtie/bowtie-1.3.1-src/scripts/run-hbb.sh file
Holders
path holder start end
Authors
path Author start end
Emails
path email start end
Urls
path url start end
License References
key short_name category owner scancode_url licensedb_url homepage_url text_urls spdx_license_key spdx_url
artistic-2.0 Artistic 2.0 Copyleft Limited Perl Foundation https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/artistic-2.0.LICENSE https://scancode-licensedb.aboutcode.org/artistic-2.0 http://www.perlfoundation.org/ https://www.perlfoundation.org/artistic_license_2_0 https://www.perlfoundation.org/attachment/legal/artistic-2_0.txt Artistic-2.0 https://spdx.org/licenses/Artistic-2.0
gpl-3.0-plus GPL 3.0 or later Copyleft Free Software Foundation (FSF) https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/gpl-3.0-plus.LICENSE https://scancode-licensedb.aboutcode.org/gpl-3.0-plus http://www.gnu.org/licenses/gpl-3.0-standalone.html http://www.gnu.org/licenses/gpl-3.0-standalone.html GPL-3.0-or-later https://spdx.org/licenses/GPL-3.0-or-later
lgpl-2.0-plus LGPL 2.0 or later Copyleft Limited Free Software Foundation (FSF) https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/lgpl-2.0-plus.LICENSE https://scancode-licensedb.aboutcode.org/lgpl-2.0-plus http://www.gnu.org/licenses/old-licenses/lgpl-2.0.html http://www.gnu.org/licenses/old-licenses/lgpl-2.0-standalone.html LGPL-2.0-or-later https://spdx.org/licenses/LGPL-2.0-or-later
unknown-license-reference Unknown License reference Unstated License Unspecified https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/unknown-license-reference.LICENSE https://scancode-licensedb.aboutcode.org/unknown-license-reference None LicenseRef-scancode-unknown-license-reference https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/unknown-license-reference.LICENSE
warranty-disclaimer Generic Bare Warranty Disclaimer Unstated License Unspecified https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/warranty-disclaimer.LICENSE https://scancode-licensedb.aboutcode.org/warranty-disclaimer None LicenseRef-scancode-warranty-disclaimer https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/warranty-disclaimer.LICENSE
zlib ZLIB License Permissive zlib https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/zlib.LICENSE https://scancode-licensedb.aboutcode.org/zlib http://www.zlib.net/ http://www.gzip.org/zlib/zlib_license.html Zlib https://spdx.org/licenses/Zlib