| hmmer |
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| hmmer/hmmer-3.3.2-chris.patch |
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| hmmer/hmmer-3.3.2-SPECPARTS |
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| hmmer/hmmer-3.3.2.tar.gz |
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| hmmer/hmmer.spec |
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| hmmer/sources |
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| hmmer/hmmer-3.3.2 |
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| hmmer/hmmer-3.3.2/.travis.yml |
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| hmmer/hmmer-3.3.2/config.guess |
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| hmmer/hmmer-3.3.2/config.sub |
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| hmmer/hmmer-3.3.2/configure |
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| hmmer/hmmer-3.3.2/configure.ac |
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| hmmer/hmmer-3.3.2/INSTALL |
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| hmmer/hmmer-3.3.2/install-sh |
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| hmmer/hmmer-3.3.2/LICENSE |
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| hmmer/hmmer-3.3.2/Makefile.in |
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| hmmer/hmmer-3.3.2/makeTAGS.sh |
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| hmmer/hmmer-3.3.2/README.md |
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| hmmer/hmmer-3.3.2/RELEASE-3.3.2.md |
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| hmmer/hmmer-3.3.2/Userguide.pdf |
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| hmmer/hmmer-3.3.2/documentation |
directory |
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| hmmer/hmmer-3.3.2/documentation/Makefile.in |
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| hmmer/hmmer-3.3.2/documentation/man |
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| hmmer/hmmer-3.3.2/documentation/man/alimask.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmalign.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmbuild.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmc2.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmconvert.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmemit.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmer.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmfetch.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmlogo.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmpgmd.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmpgmd_shard.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmpress.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmscan.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmsearch.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmsim.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/hmmstat.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/jackhmmer.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/Makefile.in |
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| hmmer/hmmer-3.3.2/documentation/man/makehmmerdb.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/nhmmer.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/nhmmscan.man.in |
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| hmmer/hmmer-3.3.2/documentation/man/phmmer.man.in |
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| hmmer/hmmer-3.3.2/documentation/userguide |
directory |
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| hmmer/hmmer-3.3.2/documentation/userguide/ack.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/copyright.tex.in |
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| hmmer/hmmer-3.3.2/documentation/userguide/daemon.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/distilled.bib |
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| hmmer/hmmer-3.3.2/documentation/userguide/formats.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/glossary.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/hmmbuild.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/hmmc.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/install.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/introduction.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/macros.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/main.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/Makefile.in |
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| hmmer/hmmer-3.3.2/documentation/userguide/pipeline.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/tabular.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/titlepage.tex.in |
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| hmmer/hmmer-3.3.2/documentation/userguide/titlepage_daemon.tex.in |
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| hmmer/hmmer-3.3.2/documentation/userguide/tufte-book.cls |
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| hmmer/hmmer-3.3.2/documentation/userguide/tufte-common-local.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/tufte-common.def |
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| hmmer/hmmer-3.3.2/documentation/userguide/tutorial.tex |
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| hmmer/hmmer-3.3.2/documentation/userguide/unsrtnat-brief.bst |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/alidisplay-serialize.ai |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/alidisplay-serialize.pdf |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/daemon-results.ai |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/daemon-results.pdf |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/daemon.ai |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/daemon.pdf |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/domain-serialize.ai |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/domain-serialize.pdf |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/gen-inclusions.py |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/globins4.sto |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/hit-serialize.ai |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/hit-serialize.pdf |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/hmmalign-globins.out |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/hmmalign-globins.out2 |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/hmmbuild-noargs.out |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/hmmc2_2.out |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/hmmpgmd-search-stats-serialize.ai |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/hmmpgmd-search-stats-serialize.pdf |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/hmmpress-minifam.out |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/hmmscan-noargs.out |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/hmmsearch-fn3-sevenless.out |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/hmmsearch-fn3-sevenless.out2 |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/inclusions.def |
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| hmmer/hmmer-3.3.2/documentation/userguide/inclusions/Makefile.in |
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| hmmer/hmmer-3.3.2/easel/.travis.yml |
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| hmmer/hmmer-3.3.2/easel/esl_alloc.c |
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| hmmer/hmmer-3.3.2/easel/esl_alphabet.h |
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| hmmer/hmmer-3.3.2/easel/esl_bitfield.c |
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| hmmer/hmmer-3.3.2/easel/esl_config.h.in |
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| hmmer/hmmer-3.3.2/easel/esl_dirichlet.c |
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| hmmer/hmmer-3.3.2/easel/esl_dirichlet.h |
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| hmmer/hmmer-3.3.2/easel/esl_distance.c |
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| hmmer/hmmer-3.3.2/easel/esl_dmatrix.c |
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| hmmer/hmmer-3.3.2/easel/esl_dmatrix.h |
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| hmmer/hmmer-3.3.2/easel/esl_dsqdata.c |
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| hmmer/hmmer-3.3.2/easel/esl_dsqdata.h |
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| hmmer/hmmer-3.3.2/easel/esl_dsqdata.md |
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| hmmer/hmmer-3.3.2/easel/esl_dsqdata.tex |
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| hmmer/hmmer-3.3.2/easel/esl_exponential.c |
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| hmmer/hmmer-3.3.2/easel/esl_exponential.h |
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| hmmer/hmmer-3.3.2/easel/esl_fileparser.c |
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| hmmer/hmmer-3.3.2/easel/esl_fileparser.h |
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| hmmer/hmmer-3.3.2/easel/esl_fileparser.tex |
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| hmmer/hmmer-3.3.2/easel/esl_gamma.c |
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| hmmer/hmmer-3.3.2/easel/esl_gamma.h |
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| hmmer/hmmer-3.3.2/easel/esl_gamma.tex |
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| hmmer/hmmer-3.3.2/easel/esl_gencode.c |
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| hmmer/hmmer-3.3.2/easel/esl_gencode.h |
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| hmmer/hmmer-3.3.2/easel/esl_getopts.c |
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| hmmer/hmmer-3.3.2/easel/esl_hmm.c |
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| hmmer/hmmer-3.3.2/easel/esl_hmm.h |
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| hmmer/hmmer-3.3.2/easel/esl_huffman.c |
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| hmmer/hmmer-3.3.2/easel/esl_hyperexp.c |
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| hmmer/hmmer-3.3.2/easel/esl_json.c |
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| hmmer/hmmer-3.3.2/easel/esl_msa_testfiles/a2m |
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| hmmer/hmmer-3.3.2/src/impl_sse |
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| hmmer/hmmer-3.3.2/src/impl_sse/00MANIFEST |
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| hmmer/hmmer-3.3.2/src/impl_sse/Makefile.in |
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| hmmer/hmmer-3.3.2/src/impl_sse/p7_omx.ai |
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| hmmer/hmmer-3.3.2/src/impl_sse/p7_omx.c |
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| hmmer/hmmer-3.3.2/src/impl_sse/p7_oprofile.c |
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| hmmer/hmmer-3.3.2/src/impl_sse/ssvfilter.c |
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| hmmer/hmmer-3.3.2/src/impl_sse/stotrace.c |
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| hmmer/hmmer-3.3.2/src/impl_sse/vitfilter.c |
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| hmmer/hmmer-3.3.2/src/impl_sse/vitscore.c |
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| hmmer/hmmer-3.3.2/src/impl_vmx |
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| hmmer/hmmer-3.3.2/src/impl_vmx/00MANIFEST |
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| hmmer/hmmer-3.3.2/src/impl_vmx/impl_vmx.h |
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| hmmer/hmmer-3.3.2/src/impl_vmx/optacc.c |
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| hmmer/hmmer-3.3.2/src/impl_vmx/p7_omx.c |
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| hmmer/hmmer-3.3.2/src/impl_vmx/p7_oprofile.c |
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| hmmer/hmmer-3.3.2/src/impl_vmx/stotrace.c |
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| hmmer/hmmer-3.3.2/src/impl_vmx/vitfilter.c |
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| hmmer/hmmer-3.3.2/src/impl_vmx/vitscore.c |
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| hmmer/hmmer-3.3.2/test-speed |
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| hmmer/hmmer-3.3.2/test-speed/00README |
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| hmmer/hmmer-3.3.2/test-speed/component-benchmark.pl |
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| hmmer/hmmer-3.3.2/test-speed/speed-master.pl |
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| hmmer/hmmer-3.3.2/test-speed/speedA-list.pl |
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