Copyrights and Licenses Information
path start end what value
htslib/htslib.spec 9 9 license mit
htslib/htslib.spec 9 9 license bsd-new
htslib/htslib.spec 10 11 license mit
htslib/htslib.spec 11 11 license mit
htslib/htslib.spec 13 13 license mit
htslib/htslib-1.15.1/bcf_sr_sort.c 6 22 license mit
htslib/htslib-1.15.1/bcf_sr_sort.h 6 22 license mit
htslib/htslib-1.15.1/bgzf.c 1 1 license mit
htslib/htslib-1.15.1/bgzf.c 7 23 license mit
htslib/htslib-1.15.1/bgzip.1 11 27 license mit
htslib/htslib-1.15.1/bgzip.c 6 22 license proprietary-license
htslib/htslib-1.15.1/builddir_vars.mk.in 7 23 license mit
htslib/htslib-1.15.1/config.mk.in 7 23 license mit
htslib/htslib-1.15.1/configure 11 12 license fsf-free
htslib/htslib-1.15.1/configure 16 17 license fsf-notice
htslib/htslib-1.15.1/configure 1455 1456 license fsf-free
htslib/htslib-1.15.1/configure 1461 1461 license warranty-disclaimer
htslib/htslib-1.15.1/configure 6167 6168 license fsf-free
htslib/htslib-1.15.1/configure.ac 7 23 license mit
htslib/htslib-1.15.1/configure.ac 39 40 license fsf-notice
htslib/htslib-1.15.1/errmod.c 8 24 license mit
htslib/htslib-1.15.1/faidx.5 10 26 license mit
htslib/htslib-1.15.1/faidx.c 8 24 license mit
htslib/htslib-1.15.1/header.c 5 28 license bsd-new
htslib/htslib-1.15.1/header.h 5 28 license bsd-new
htslib/htslib-1.15.1/hfile.c 7 23 license mit
htslib/htslib-1.15.1/hfile_gcs.c 7 23 license mit
htslib/htslib-1.15.1/hfile_internal.h 7 23 license mit
htslib/htslib-1.15.1/hfile_libcurl.c 7 23 license mit
htslib/htslib-1.15.1/hfile_s3.c 7 23 license mit
htslib/htslib-1.15.1/hfile_s3_write.c 8 24 license mit
htslib/htslib-1.15.1/hts.c 8 24 license mit
htslib/htslib-1.15.1/hts_expr.c 7 23 license mit
htslib/htslib-1.15.1/hts_internal.h 5 21 license mit
htslib/htslib-1.15.1/hts_os.c 8 24 license mit
htslib/htslib-1.15.1/htscodecs_bundled.mk 7 23 license mit
htslib/htslib-1.15.1/htscodecs_external.mk 7 23 license mit
htslib/htslib-1.15.1/htsfile.1 9 25 license mit
htslib/htslib-1.15.1/htsfile.c 7 23 license mit
htslib/htslib-1.15.1/htslib-s3-plugin.7 9 25 license mit
htslib/htslib-1.15.1/htslib.mk 7 23 license mit
htslib/htslib-1.15.1/htslib_vars.mk 7 23 license mit
htslib/htslib-1.15.1/kfunc.c 1 1 license mit
htslib/htslib-1.15.1/kfunc.c 6 24 license mit
htslib/htslib-1.15.1/kstring.c 1 1 license mit
htslib/htslib-1.15.1/kstring.c 6 24 license mit
htslib/htslib-1.15.1/LICENSE 2 2 license mit
htslib/htslib-1.15.1/LICENSE 4 4 license mit
htslib/htslib-1.15.1/LICENSE 8 24 license mit
htslib/htslib-1.15.1/LICENSE 28 28 license bsd-new
htslib/htslib-1.15.1/LICENSE 30 30 license bsd-new
htslib/htslib-1.15.1/LICENSE 34 42 license bsd-simplified
htslib/htslib-1.15.1/LICENSE 44 57 license bsd-new
htslib/htslib-1.15.1/Makefile 7 23 license mit
htslib/htslib-1.15.1/md5.c 16 34 license public-domain OR other-permissive
htslib/htslib-1.15.1/multipart.c 7 23 license mit
htslib/htslib-1.15.1/plugin.c 7 23 license mit
htslib/htslib-1.15.1/probaln.c 1 1 license mit
htslib/htslib-1.15.1/probaln.c 6 24 license mit
htslib/htslib-1.15.1/README 21 21 license mit AND bsd-new
htslib/htslib-1.15.1/README 21 21 license bsd-new
htslib/htslib-1.15.1/realn.c 8 24 license mit
htslib/htslib-1.15.1/regidx.c 6 22 license mit
htslib/htslib-1.15.1/region.c 7 23 license mit
htslib/htslib-1.15.1/sam.5 10 26 license mit
htslib/htslib-1.15.1/sam.c 8 24 license mit
htslib/htslib-1.15.1/sam_internal.h 5 21 license mit
htslib/htslib-1.15.1/synced_bcf_reader.c 7 23 license mit
htslib/htslib-1.15.1/tabix.1 11 27 license mit
htslib/htslib-1.15.1/tabix.c 8 24 license mit
htslib/htslib-1.15.1/tbx.c 8 24 license mit
htslib/htslib-1.15.1/textutils.c 7 23 license mit
htslib/htslib-1.15.1/textutils_internal.h 7 23 license mit
htslib/htslib-1.15.1/thread_pool.c 7 23 license mit
htslib/htslib-1.15.1/thread_pool_internal.h 7 23 license mit
htslib/htslib-1.15.1/vcf.5 11 27 license mit
htslib/htslib-1.15.1/vcf.c 9 25 license mit
htslib/htslib-1.15.1/vcf_sweep.c 7 23 license mit
htslib/htslib-1.15.1/vcfutils.c 7 23 license mit
htslib/htslib-1.15.1/version.sh 8 24 license mit
htslib/htslib-1.15.1/cram/cram.h 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_codecs.c 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_codecs.h 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_decode.c 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_decode.h 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_encode.c 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_encode.h 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_external.c 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_index.c 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_index.h 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_io.c 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_io.h 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_samtools.h 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_stats.c 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_stats.h 5 28 license bsd-new
htslib/htslib-1.15.1/cram/cram_structs.h 5 28 license bsd-new
htslib/htslib-1.15.1/cram/mFILE.c 5 28 license bsd-new
htslib/htslib-1.15.1/cram/mFILE.h 5 28 license bsd-new
htslib/htslib-1.15.1/cram/misc.h 5 29 license bsd-new
htslib/htslib-1.15.1/cram/misc.h 37 60 license bsd-new
htslib/htslib-1.15.1/cram/open_trace_file.c 7 31 license bsd-new
htslib/htslib-1.15.1/cram/open_trace_file.c 38 61 license bsd-new
htslib/htslib-1.15.1/cram/open_trace_file.h 7 31 license bsd-new
htslib/htslib-1.15.1/cram/open_trace_file.h 38 61 license bsd-new
htslib/htslib-1.15.1/cram/os.h 5 29 license bsd-new
htslib/htslib-1.15.1/cram/os.h 36 59 license bsd-new
htslib/htslib-1.15.1/cram/pooled_alloc.c 5 28 license bsd-new
htslib/htslib-1.15.1/cram/pooled_alloc.h 5 28 license bsd-new
htslib/htslib-1.15.1/cram/string_alloc.c 5 28 license bsd-new
htslib/htslib-1.15.1/cram/string_alloc.h 5 28 license bsd-new
htslib/htslib-1.15.1/htscodecs/LICENSE.md 2 2 license bsd-new
htslib/htslib-1.15.1/htscodecs/LICENSE.md 4 29 license bsd-new
htslib/htslib-1.15.1/htscodecs/LICENSE.md 31 31 license public-domain
htslib/htslib-1.15.1/htscodecs/LICENSE.md 35 35 license public-domain
htslib/htslib-1.15.1/htscodecs/LICENSE.md 39 43 license cc0-1.0
htslib/htslib-1.15.1/htscodecs/LICENSE.md 41 41 license cc0-1.0
htslib/htslib-1.15.1/htscodecs/htscodecs/arith_dynamic.c 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/arith_dynamic.h 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/c_simple_model.h 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/fqzcomp_qual.c 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/fqzcomp_qual.h 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/htscodecs.c 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/htscodecs.h 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/htscodecs_endian.h 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/pack.c 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/pack.h 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/pooled_alloc.h 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_byte.h 3 3 license public-domain
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_byte.h 11 11 license public-domain
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_static.c 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_static.h 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_static4x16.h 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_static4x16pr.c 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_word.h 3 3 license public-domain
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_word.h 11 11 license public-domain
htslib/htslib-1.15.1/htscodecs/htscodecs/rle.c 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/rle.h 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/tokenise_name3.c 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/tokenise_name3.h 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/utils.h 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/varint.h 7 33 license bsd-new
htslib/htslib-1.15.1/htscodecs/htscodecs/varint2.h 9 35 license bsd-new
htslib/htslib-1.15.1/htscodecs/tests/arith_dynamic_fuzz.c 6 32 license bsd-new
htslib/htslib-1.15.1/htscodecs/tests/arith_dynamic_test.c 6 32 license bsd-new
htslib/htslib-1.15.1/htscodecs/tests/fqzcomp_qual_fuzz.c 6 32 license bsd-new
htslib/htslib-1.15.1/htscodecs/tests/fqzcomp_qual_test.c 6 32 license bsd-new
htslib/htslib-1.15.1/htscodecs/tests/rANS_static4x16pr_fuzz.c 6 32 license bsd-new
htslib/htslib-1.15.1/htscodecs/tests/rANS_static4x16pr_test.c 6 32 license bsd-new
htslib/htslib-1.15.1/htscodecs/tests/rANS_static_fuzz.c 6 32 license bsd-new
htslib/htslib-1.15.1/htscodecs/tests/rANS_static_test.c 6 32 license bsd-new
htslib/htslib-1.15.1/htscodecs/tests/tokenise_name3_fuzz.c 6 32 license bsd-new
htslib/htslib-1.15.1/htscodecs/tests/tokenise_name3_test.c 5 31 license bsd-new
htslib/htslib-1.15.1/htscodecs/tests/varint_test.c 6 32 license bsd-new
htslib/htslib-1.15.1/htslib/hts_defs.h 7 23 license mit
htslib/htslib-1.15.1/htslib/hts_endian.h 8 24 license mit
htslib/htslib-1.15.1/htslib/hts_expr.h 7 23 license mit
htslib/htslib-1.15.1/htslib/hts_log.h 3 3 license mit
htslib/htslib-1.15.1/htslib/hts_log.h 8 26 license mit
htslib/htslib-1.15.1/htslib/hts_os.h 8 24 license mit
htslib/htslib-1.15.1/htslib/kbitset.h 1 1 license mit
htslib/htslib-1.15.1/htslib/kbitset.h 5 23 license mit
htslib/htslib-1.15.1/htslib/kfunc.h 1 1 license mit
htslib/htslib-1.15.1/htslib/kfunc.h 6 24 license mit
htslib/htslib-1.15.1/htslib/khash.h 1 1 license mit
htslib/htslib-1.15.1/htslib/khash.h 6 24 license mit
htslib/htslib-1.15.1/htslib/khash_str2int.h 7 23 license mit
htslib/htslib-1.15.1/htslib/klist.h 1 1 license mit
htslib/htslib-1.15.1/htslib/klist.h 6 24 license mit
htslib/htslib-1.15.1/htslib/knetfile.h 1 1 license mit
htslib/htslib-1.15.1/htslib/knetfile.h 6 24 license mit
htslib/htslib-1.15.1/htslib/kroundup.h 1 1 license mit
htslib/htslib-1.15.1/htslib/kroundup.h 5 23 license mit
htslib/htslib-1.15.1/htslib/kseq.h 1 1 license mit
htslib/htslib-1.15.1/htslib/kseq.h 6 24 license mit
htslib/htslib-1.15.1/htslib/ksort.h 1 1 license mit
htslib/htslib-1.15.1/htslib/ksort.h 5 23 license mit
htslib/htslib-1.15.1/htslib/kstring.h 1 1 license mit
htslib/htslib-1.15.1/htslib/kstring.h 6 24 license mit
htslib/htslib-1.15.1/htslib/regidx.h 8 24 license mit
htslib/htslib-1.15.1/htslib/sam.h 9 25 license mit
htslib/htslib-1.15.1/htslib/synced_bcf_reader.h 8 24 license mit
htslib/htslib-1.15.1/htslib/tbx.h 9 25 license mit
htslib/htslib-1.15.1/htslib/thread_pool.h 8 24 license mit
htslib/htslib-1.15.1/htslib/vcf.h 9 25 license mit
htslib/htslib-1.15.1/htslib/vcf_sweep.h 8 24 license mit
htslib/htslib-1.15.1/htslib/vcfutils.h 8 24 license mit
htslib/htslib-1.15.1/m4/hts_hide_dynamic_syms.m4 7 7 license mit
htslib/htslib-1.15.1/m4/hts_hide_dynamic_syms.m4 11 27 license mit
htslib/htslib-1.15.1/m4/hts_prog_cc_warnings.m4 19 22 license fsf-ap
htslib/htslib-1.15.1/m4/hts_prog_cc_warnings.m4 23 23 license mit
htslib/htslib-1.15.1/m4/pkg.m4 7 26 license gpl-2.0-plus WITH autoconf-simple-exception-2.0
htslib/htslib-1.15.1/os/lzma_stub.h 11 12 license public-domain
htslib/htslib-1.15.1/os/lzma_stub.h 19 19 license public-domain
htslib/htslib-1.15.1/os/rand.c 11 17 license martin-birgmeier
htslib/htslib-1.15.1/test/compare_sam.pl 7 23 license mit
htslib/htslib-1.15.1/test/cross_validate.sh 5 21 license mit
htslib/htslib-1.15.1/test/fieldarith.c 7 23 license mit
htslib/htslib-1.15.1/test/header_syms.pl 7 23 license mit
htslib/htslib-1.15.1/test/hfile.c 7 23 license mit
htslib/htslib-1.15.1/test/hts_endian.c 6 22 license mit
htslib/htslib-1.15.1/test/pileup.c 7 23 license mit
htslib/htslib-1.15.1/test/pileup_mod.c 7 23 license mit
htslib/htslib-1.15.1/test/plugins-dlhts.c 7 23 license mit
htslib/htslib-1.15.1/test/sam.c 7 23 license mit
htslib/htslib-1.15.1/test/simple_test_driver.sh 9 25 license mit
htslib/htslib-1.15.1/test/test-bcf-sr.c 6 22 license mit
htslib/htslib-1.15.1/test/test-bcf-sr.pl 8 24 license mit
htslib/htslib-1.15.1/test/test-bcf-translate.c 7 23 license mit
htslib/htslib-1.15.1/test/test-logging.pl 7 23 license mit
htslib/htslib-1.15.1/test/test-parse-reg.c 6 22 license mit
htslib/htslib-1.15.1/test/test-regidx.c 9 25 license mit
htslib/htslib-1.15.1/test/test-vcf-api.c 7 23 license mit
htslib/htslib-1.15.1/test/test-vcf-sweep.c 7 23 license mit
htslib/htslib-1.15.1/test/test.pl 7 23 license mit
htslib/htslib-1.15.1/test/test_bgzf.c 7 23 license mit
htslib/htslib-1.15.1/test/test_expr.c 7 23 license proprietary-license
htslib/htslib-1.15.1/test/test_index.c 7 23 license mit
htslib/htslib-1.15.1/test/test_introspection.c 7 23 license mit
htslib/htslib-1.15.1/test/test_kfunc.c 7 23 license mit
htslib/htslib-1.15.1/test/test_kstring.c 7 23 license mit
htslib/htslib-1.15.1/test/test_mod.c 7 23 license mit
htslib/htslib-1.15.1/test/test_realn.c 7 23 license mit
htslib/htslib-1.15.1/test/test_str2int.c 7 23 license mit
htslib/htslib-1.15.1/test/test_view.c 8 24 license mit
htslib/htslib-1.15.1/test/thrash_threads1.c 1 1 license mit
htslib/htslib-1.15.1/test/thrash_threads1.c 5 21 license mit
htslib/htslib-1.15.1/test/thrash_threads2.c 1 1 license mit
htslib/htslib-1.15.1/test/thrash_threads2.c 5 21 license mit
htslib/htslib-1.15.1/test/thrash_threads3.c 1 1 license mit
htslib/htslib-1.15.1/test/thrash_threads3.c 5 21 license mit
htslib/htslib-1.15.1/test/thrash_threads4.c 1 1 license mit
htslib/htslib-1.15.1/test/thrash_threads4.c 5 21 license mit
htslib/htslib-1.15.1/test/thrash_threads5.c 1 1 license mit
htslib/htslib-1.15.1/test/thrash_threads5.c 5 21 license mit
htslib/htslib-1.15.1/test/thrash_threads6.c 1 1 license mit
htslib/htslib-1.15.1/test/thrash_threads6.c 5 21 license mit
htslib/htslib-1.15.1/test/thrash_threads7.c 1 1 license mit
htslib/htslib-1.15.1/test/thrash_threads7.c 5 21 license mit
htslib/htslib-1.15.1/test/with-shlib.sh 8 24 license mit
htslib/htslib-1.15.1/test/base_mods/base-mods.sh 7 23 license mit
htslib/htslib-1.15.1/test/base_mods/base-mods.tst 5 21 license mit
htslib/htslib-1.15.1/test/fastq/fastq.tst 5 21 license mit
htslib/htslib-1.15.1/test/fastq/test-fastq.sh 7 23 license mit
htslib/htslib-1.15.1/test/fuzz/hts_open_fuzzer.c 8 24 license mit
htslib/htslib-1.15.1/test/maintainer/check_copyright.pl 8 24 license mit
htslib/htslib-1.15.1/test/maintainer/check_copyright.pl 53 53 license public-domain
htslib/htslib-1.15.1/test/maintainer/check_copyright.pl 54 54 license public-domain
htslib/htslib-1.15.1/test/maintainer/check_copyright.pl 79 79 license unknown-license-reference
htslib/htslib-1.15.1/test/maintainer/check_spaces.pl 8 24 license mit
htslib/htslib-1.15.1/test/mpileup/c1#pad1.sam 6 23 license mit AND proprietary-license
htslib/htslib-1.15.1/test/mpileup/c1#pad2.sam 6 23 license mit AND proprietary-license
htslib/htslib-1.15.1/test/mpileup/c1#pad3.sam 7 24 license mit AND proprietary-license
htslib/htslib-1.15.1/test/mpileup/mp_D.sam 6 23 license mit
htslib/htslib-1.15.1/test/mpileup/mp_DI.sam 6 23 license mit AND proprietary-license
htslib/htslib-1.15.1/test/mpileup/mp_I.sam 6 23 license mit AND proprietary-license
htslib/htslib-1.15.1/test/mpileup/mp_ID.sam 6 23 license mit AND proprietary-license
htslib/htslib-1.15.1/test/mpileup/mp_N.sam 6 23 license mit AND proprietary-license
htslib/htslib-1.15.1/test/mpileup/mp_N2.sam 6 23 license mit AND proprietary-license
htslib/htslib-1.15.1/test/mpileup/mp_P.sam 6 23 license mit AND proprietary-license
htslib/htslib-1.15.1/test/mpileup/mpileup.tst 5 21 license mit
htslib/htslib-1.15.1/test/mpileup/test-pileup.sh 7 23 license mit
htslib/htslib-1.15.1/test/sam_filter/filter.sh 7 23 license mit
htslib/htslib-1.15.1/test/sam_filter/filter.tst 5 21 license mit
htslib/htslib-1.15.1/test/tabix/bed_file.bed 1 1 license mit
htslib/htslib-1.15.1/test/tabix/bed_file.bed 5 21 license mit
htslib/htslib-1.15.1/test/tabix/tabix.tst 5 21 license mit
htslib/htslib-1.15.1/test/tabix/test-tabix.sh 7 23 license mit
File Information
path type name extension date size sha1 md5 files_count mime_type file_type programming_language is_binary is_text is_archive is_media is_source is_script
htslib directory
htslib/htslib-1.15.1-gcc12.patch file
htslib/htslib-1.15.1-SPECPARTS directory
htslib/htslib-1.15.1.tar.bz2 file
htslib/htslib.spec file
htslib/sources file
htslib/htslib-1.15.1 directory
htslib/htslib-1.15.1/bcf_sr_sort.c file
htslib/htslib-1.15.1/bcf_sr_sort.h file
htslib/htslib-1.15.1/bgzf.c file
htslib/htslib-1.15.1/bgzip.1 file
htslib/htslib-1.15.1/bgzip.c file
htslib/htslib-1.15.1/builddir_vars.mk.in file
htslib/htslib-1.15.1/config.h.in file
htslib/htslib-1.15.1/config.mk.in file
htslib/htslib-1.15.1/configure file
htslib/htslib-1.15.1/configure.ac file
htslib/htslib-1.15.1/errmod.c file
htslib/htslib-1.15.1/faidx.5 file
htslib/htslib-1.15.1/faidx.c file
htslib/htslib-1.15.1/header.c file
htslib/htslib-1.15.1/header.h file
htslib/htslib-1.15.1/hfile.c file
htslib/htslib-1.15.1/hfile_gcs.c file
htslib/htslib-1.15.1/hfile_internal.h file
htslib/htslib-1.15.1/hfile_libcurl.c file
htslib/htslib-1.15.1/hfile_s3.c file
htslib/htslib-1.15.1/hfile_s3_write.c file
htslib/htslib-1.15.1/hts.c file
htslib/htslib-1.15.1/hts_expr.c file
htslib/htslib-1.15.1/hts_internal.h file
htslib/htslib-1.15.1/hts_os.c file
htslib/htslib-1.15.1/htscodecs_bundled.mk file
htslib/htslib-1.15.1/htscodecs_external.mk file
htslib/htslib-1.15.1/htsfile.1 file
htslib/htslib-1.15.1/htsfile.c file
htslib/htslib-1.15.1/htslib-s3-plugin.7 file
htslib/htslib-1.15.1/htslib.mk file
htslib/htslib-1.15.1/htslib.pc.in file
htslib/htslib-1.15.1/htslib_vars.mk file
htslib/htslib-1.15.1/INSTALL file
htslib/htslib-1.15.1/kfunc.c file
htslib/htslib-1.15.1/kstring.c file
htslib/htslib-1.15.1/LICENSE file
htslib/htslib-1.15.1/Makefile file
htslib/htslib-1.15.1/md5.c file
htslib/htslib-1.15.1/multipart.c file
htslib/htslib-1.15.1/NEWS file
htslib/htslib-1.15.1/plugin.c file
htslib/htslib-1.15.1/probaln.c file
htslib/htslib-1.15.1/README file
htslib/htslib-1.15.1/README.large_positions.md file
htslib/htslib-1.15.1/realn.c file
htslib/htslib-1.15.1/regidx.c file
htslib/htslib-1.15.1/region.c file
htslib/htslib-1.15.1/sam.5 file
htslib/htslib-1.15.1/sam.c file
htslib/htslib-1.15.1/sam_internal.h file
htslib/htslib-1.15.1/synced_bcf_reader.c file
htslib/htslib-1.15.1/tabix.1 file
htslib/htslib-1.15.1/tabix.c file
htslib/htslib-1.15.1/tbx.c file
htslib/htslib-1.15.1/textutils.c file
htslib/htslib-1.15.1/textutils_internal.h file
htslib/htslib-1.15.1/thread_pool.c file
htslib/htslib-1.15.1/thread_pool_internal.h file
htslib/htslib-1.15.1/vcf.5 file
htslib/htslib-1.15.1/vcf.c file
htslib/htslib-1.15.1/vcf_sweep.c file
htslib/htslib-1.15.1/vcfutils.c file
htslib/htslib-1.15.1/version.sh file
htslib/htslib-1.15.1/cram directory
htslib/htslib-1.15.1/cram/cram.h file
htslib/htslib-1.15.1/cram/cram_codecs.c file
htslib/htslib-1.15.1/cram/cram_codecs.h file
htslib/htslib-1.15.1/cram/cram_decode.c file
htslib/htslib-1.15.1/cram/cram_decode.h file
htslib/htslib-1.15.1/cram/cram_encode.c file
htslib/htslib-1.15.1/cram/cram_encode.h file
htslib/htslib-1.15.1/cram/cram_external.c file
htslib/htslib-1.15.1/cram/cram_index.c file
htslib/htslib-1.15.1/cram/cram_index.h file
htslib/htslib-1.15.1/cram/cram_io.c file
htslib/htslib-1.15.1/cram/cram_io.h file
htslib/htslib-1.15.1/cram/cram_samtools.h file
htslib/htslib-1.15.1/cram/cram_stats.c file
htslib/htslib-1.15.1/cram/cram_stats.h file
htslib/htslib-1.15.1/cram/cram_structs.h file
htslib/htslib-1.15.1/cram/mFILE.c file
htslib/htslib-1.15.1/cram/mFILE.h file
htslib/htslib-1.15.1/cram/misc.h file
htslib/htslib-1.15.1/cram/open_trace_file.c file
htslib/htslib-1.15.1/cram/open_trace_file.h file
htslib/htslib-1.15.1/cram/os.h file
htslib/htslib-1.15.1/cram/pooled_alloc.c file
htslib/htslib-1.15.1/cram/pooled_alloc.h file
htslib/htslib-1.15.1/cram/string_alloc.c file
htslib/htslib-1.15.1/cram/string_alloc.h file
htslib/htslib-1.15.1/htscodecs directory
htslib/htslib-1.15.1/htscodecs/LICENSE.md file
htslib/htslib-1.15.1/htscodecs/MAINTAINERS.md file
htslib/htslib-1.15.1/htscodecs/NEWS file
htslib/htslib-1.15.1/htscodecs/htscodecs directory
htslib/htslib-1.15.1/htscodecs/htscodecs/arith_dynamic.c file
htslib/htslib-1.15.1/htscodecs/htscodecs/arith_dynamic.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/c_range_coder.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/c_simple_model.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/fqzcomp_qual.c file
htslib/htslib-1.15.1/htscodecs/htscodecs/fqzcomp_qual.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/htscodecs.c file
htslib/htslib-1.15.1/htscodecs/htscodecs/htscodecs.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/htscodecs_endian.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/pack.c file
htslib/htslib-1.15.1/htscodecs/htscodecs/pack.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/pooled_alloc.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_byte.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_static.c file
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_static.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_static4x16.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_static4x16pr.c file
htslib/htslib-1.15.1/htscodecs/htscodecs/rANS_word.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/rle.c file
htslib/htslib-1.15.1/htscodecs/htscodecs/rle.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/tokenise_name3.c file
htslib/htslib-1.15.1/htscodecs/htscodecs/tokenise_name3.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/utils.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/varint.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/varint2.h file
htslib/htslib-1.15.1/htscodecs/htscodecs/version.h file
htslib/htslib-1.15.1/htscodecs/tests directory
htslib/htslib-1.15.1/htscodecs/tests/arith.test file
htslib/htslib-1.15.1/htscodecs/tests/arith_dynamic_fuzz.c file
htslib/htslib-1.15.1/htscodecs/tests/arith_dynamic_test.c file
htslib/htslib-1.15.1/htscodecs/tests/fqzcomp.test file
htslib/htslib-1.15.1/htscodecs/tests/fqzcomp_qual_fuzz.c file
htslib/htslib-1.15.1/htscodecs/tests/fqzcomp_qual_test.c file
htslib/htslib-1.15.1/htscodecs/tests/rans4x16.test file
htslib/htslib-1.15.1/htscodecs/tests/rans4x8.test file
htslib/htslib-1.15.1/htscodecs/tests/rANS_static4x16pr_fuzz.c file
htslib/htslib-1.15.1/htscodecs/tests/rANS_static4x16pr_test.c file
htslib/htslib-1.15.1/htscodecs/tests/rANS_static_fuzz.c file
htslib/htslib-1.15.1/htscodecs/tests/rANS_static_test.c file
htslib/htslib-1.15.1/htscodecs/tests/tok3.test file
htslib/htslib-1.15.1/htscodecs/tests/tokenise_name3_fuzz.c file
htslib/htslib-1.15.1/htscodecs/tests/tokenise_name3_test.c file
htslib/htslib-1.15.1/htscodecs/tests/varint_test.c file
htslib/htslib-1.15.1/htscodecs/tests/dat directory
htslib/htslib-1.15.1/htscodecs/tests/dat/q4 file
htslib/htslib-1.15.1/htscodecs/tests/dat/q40+dir file
htslib/htslib-1.15.1/htscodecs/tests/dat/q8 file
htslib/htslib-1.15.1/htscodecs/tests/dat/qvar file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith directory
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q4.0 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q4.1 file
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htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q4.129 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q4.192 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q4.193 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q4.64 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q4.65 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q4.8 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q4.9 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q40+dir.0 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q40+dir.1 file
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htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q40+dir.65 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q40+dir.8 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q40+dir.9 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q8.0 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q8.1 file
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htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q8.129 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q8.192 file
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htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q8.64 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/q8.65 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/qvar.0 file
htslib/htslib-1.15.1/htscodecs/tests/dat/arith/qvar.1 file
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htslib/htslib-1.15.1/htscodecs/tests/dat/arith/qvar.65 file
htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp directory
htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/q4.0 file
htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/q4.1 file
htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/q4.2 file
htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/q4.3 file
htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/q40+dir.0 file
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htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/q40+dir.3 file
htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/q8.0 file
htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/q8.1 file
htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/q8.2 file
htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/q8.3 file
htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/qvar.0 file
htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/qvar.1 file
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htslib/htslib-1.15.1/htscodecs/tests/dat/fqzcomp/qvar.3 file
htslib/htslib-1.15.1/htscodecs/tests/dat/r4x16 directory
htslib/htslib-1.15.1/htscodecs/tests/dat/r4x16/q4.0 file
htslib/htslib-1.15.1/htscodecs/tests/dat/r4x16/q4.1 file
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htslib/htslib-1.15.1/htscodecs/tests/dat/r4x16/qvar.1 file
htslib/htslib-1.15.1/htscodecs/tests/dat/r4x8 directory
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htslib/htslib-1.15.1/htscodecs/tests/names directory
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htslib/htslib-1.15.1/htscodecs/tests/names/nv.names file
htslib/htslib-1.15.1/htscodecs/tests/names/nv2.names file
htslib/htslib-1.15.1/htscodecs/tests/names/rr.names file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3 directory
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/01.names.1 file
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htslib/htslib-1.15.1/htscodecs/tests/names/tok3/20.names.7 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/20.names.9 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv.names.1 file
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htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv.names.13 file
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htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv.names.17 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv.names.19 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv.names.3 file
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htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv.names.7 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv.names.9 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv2.names.1 file
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htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv2.names.15 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv2.names.17 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv2.names.19 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv2.names.3 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv2.names.5 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv2.names.7 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/nv2.names.9 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/rr.names.1 file
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htslib/htslib-1.15.1/htscodecs/tests/names/tok3/rr.names.13 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/rr.names.15 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/rr.names.17 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/rr.names.19 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/rr.names.3 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/rr.names.5 file
htslib/htslib-1.15.1/htscodecs/tests/names/tok3/rr.names.7 file
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htslib/htslib-1.15.1/htslib directory
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htslib/htslib-1.15.1/htslib/cram.h file
htslib/htslib-1.15.1/htslib/faidx.h file
htslib/htslib-1.15.1/htslib/hfile.h file
htslib/htslib-1.15.1/htslib/hts.h file
htslib/htslib-1.15.1/htslib/hts_defs.h file
htslib/htslib-1.15.1/htslib/hts_endian.h file
htslib/htslib-1.15.1/htslib/hts_expr.h file
htslib/htslib-1.15.1/htslib/hts_log.h file
htslib/htslib-1.15.1/htslib/hts_os.h file
htslib/htslib-1.15.1/htslib/kbitset.h file
htslib/htslib-1.15.1/htslib/kfunc.h file
htslib/htslib-1.15.1/htslib/khash.h file
htslib/htslib-1.15.1/htslib/khash_str2int.h file
htslib/htslib-1.15.1/htslib/klist.h file
htslib/htslib-1.15.1/htslib/knetfile.h file
htslib/htslib-1.15.1/htslib/kroundup.h file
htslib/htslib-1.15.1/htslib/kseq.h file
htslib/htslib-1.15.1/htslib/ksort.h file
htslib/htslib-1.15.1/htslib/kstring.h file
htslib/htslib-1.15.1/htslib/regidx.h file
htslib/htslib-1.15.1/htslib/sam.h file
htslib/htslib-1.15.1/htslib/synced_bcf_reader.h file
htslib/htslib-1.15.1/htslib/tbx.h file
htslib/htslib-1.15.1/htslib/thread_pool.h file
htslib/htslib-1.15.1/htslib/vcf.h file
htslib/htslib-1.15.1/htslib/vcf_sweep.h file
htslib/htslib-1.15.1/htslib/vcfutils.h file
htslib/htslib-1.15.1/m4 directory
htslib/htslib-1.15.1/m4/hts_hide_dynamic_syms.m4 file
htslib/htslib-1.15.1/m4/hts_prog_cc_warnings.m4 file
htslib/htslib-1.15.1/m4/pkg.m4 file
htslib/htslib-1.15.1/os directory
htslib/htslib-1.15.1/os/lzma_stub.h file
htslib/htslib-1.15.1/os/rand.c file
htslib/htslib-1.15.1/test directory
htslib/htslib-1.15.1/test/auxf#values.sam file
htslib/htslib-1.15.1/test/auxf#values_java.cram file
htslib/htslib-1.15.1/test/auxf.fa file
htslib/htslib-1.15.1/test/auxf.fa.fai file
htslib/htslib-1.15.1/test/bgziptest.txt file
htslib/htslib-1.15.1/test/bgziptest.txt.gz file
htslib/htslib-1.15.1/test/bgziptest.txt.gz.gzi file
htslib/htslib-1.15.1/test/c1#bounds.sam file
htslib/htslib-1.15.1/test/c1#clip.sam file
htslib/htslib-1.15.1/test/c1#noseq.sam file
htslib/htslib-1.15.1/test/c1#pad1.sam file
htslib/htslib-1.15.1/test/c1#pad2.sam file
htslib/htslib-1.15.1/test/c1#pad3.sam file
htslib/htslib-1.15.1/test/c1#unknown.sam file
htslib/htslib-1.15.1/test/c1.fa file
htslib/htslib-1.15.1/test/c1.fa.fai file
htslib/htslib-1.15.1/test/c2#pad.sam file
htslib/htslib-1.15.1/test/c2.fa file
htslib/htslib-1.15.1/test/c2.fa.fai file
htslib/htslib-1.15.1/test/ce#1.sam file
htslib/htslib-1.15.1/test/ce#1000.sam file
htslib/htslib-1.15.1/test/ce#2.sam file
htslib/htslib-1.15.1/test/ce#5.sam file
htslib/htslib-1.15.1/test/ce#5b.sam file
htslib/htslib-1.15.1/test/ce#5b_java.cram file
htslib/htslib-1.15.1/test/ce#large_seq.sam file
htslib/htslib-1.15.1/test/ce#supp.sam file
htslib/htslib-1.15.1/test/ce#tag_depadded.sam file
htslib/htslib-1.15.1/test/ce#tag_padded.sam file
htslib/htslib-1.15.1/test/ce#unmap.sam file
htslib/htslib-1.15.1/test/ce#unmap1.sam file
htslib/htslib-1.15.1/test/ce#unmap2.sam file
htslib/htslib-1.15.1/test/ce.fa file
htslib/htslib-1.15.1/test/ce.fa.fai file
htslib/htslib-1.15.1/test/colons.bam file
htslib/htslib-1.15.1/test/colons.bam.bai file
htslib/htslib-1.15.1/test/compare_sam.pl file
htslib/htslib-1.15.1/test/cross_validate.sh file
htslib/htslib-1.15.1/test/emptyfile file
htslib/htslib-1.15.1/test/faidx.fa file
htslib/htslib-1.15.1/test/fastqs.fq file
htslib/htslib-1.15.1/test/fastqs_README.txt file
htslib/htslib-1.15.1/test/fieldarith.c file
htslib/htslib-1.15.1/test/fieldarith.sam file
htslib/htslib-1.15.1/test/formatcols.vcf file
htslib/htslib-1.15.1/test/formatmissing-out.vcf file
htslib/htslib-1.15.1/test/formatmissing.vcf file
htslib/htslib-1.15.1/test/header_syms.pl file
htslib/htslib-1.15.1/test/hfile.c file
htslib/htslib-1.15.1/test/hts_endian.c file
htslib/htslib-1.15.1/test/index.bam.bai file
htslib/htslib-1.15.1/test/index.bam.csi file
htslib/htslib-1.15.1/test/index.bcf.csi file
htslib/htslib-1.15.1/test/index.cram.crai file
htslib/htslib-1.15.1/test/index.sam file
htslib/htslib-1.15.1/test/index.sam.gz.bai file
htslib/htslib-1.15.1/test/index.sam.gz.csi file
htslib/htslib-1.15.1/test/index.vcf file
htslib/htslib-1.15.1/test/index.vcf.gz.csi file
htslib/htslib-1.15.1/test/index.vcf.gz.tbi file
htslib/htslib-1.15.1/test/index2.sam file
htslib/htslib-1.15.1/test/index_dos.sam file
htslib/htslib-1.15.1/test/md#1.sam file
htslib/htslib-1.15.1/test/md.fa file
htslib/htslib-1.15.1/test/md.fa.fai file
htslib/htslib-1.15.1/test/no_hdr_sq_1.bam file
htslib/htslib-1.15.1/test/no_hdr_sq_1.bam.csi file
htslib/htslib-1.15.1/test/no_hdr_sq_1.expected.sam file
htslib/htslib-1.15.1/test/noroundtrip-out.vcf file
htslib/htslib-1.15.1/test/noroundtrip.vcf file
htslib/htslib-1.15.1/test/pileup.c file
htslib/htslib-1.15.1/test/pileup_mod.c file
htslib/htslib-1.15.1/test/plugins-dlhts.c file
htslib/htslib-1.15.1/test/range.bam file
htslib/htslib-1.15.1/test/range.bam.bai file
htslib/htslib-1.15.1/test/range.cram file
htslib/htslib-1.15.1/test/range.cram.crai file
htslib/htslib-1.15.1/test/range.out file
htslib/htslib-1.15.1/test/realn01.fa file
htslib/htslib-1.15.1/test/realn01.fa.fai file
htslib/htslib-1.15.1/test/realn01.sam file
htslib/htslib-1.15.1/test/realn01_exp-a.sam file
htslib/htslib-1.15.1/test/realn01_exp-e.sam file
htslib/htslib-1.15.1/test/realn01_exp.sam file
htslib/htslib-1.15.1/test/realn02-r.sam file
htslib/htslib-1.15.1/test/realn02.fa file
htslib/htslib-1.15.1/test/realn02.fa.fai file
htslib/htslib-1.15.1/test/realn02.sam file
htslib/htslib-1.15.1/test/realn02_exp-a.sam file
htslib/htslib-1.15.1/test/realn02_exp-e.sam file
htslib/htslib-1.15.1/test/realn02_exp.sam file
htslib/htslib-1.15.1/test/sam.c file
htslib/htslib-1.15.1/test/simple_test_driver.sh file
htslib/htslib-1.15.1/test/tabix.out file
htslib/htslib-1.15.1/test/test-bcf-sr.c file
htslib/htslib-1.15.1/test/test-bcf-sr.pl file
htslib/htslib-1.15.1/test/test-bcf-translate.c file
htslib/htslib-1.15.1/test/test-bcf-translate.out file
htslib/htslib-1.15.1/test/test-logging.pl file
htslib/htslib-1.15.1/test/test-parse-reg.c file
htslib/htslib-1.15.1/test/test-regidx.c file
htslib/htslib-1.15.1/test/test-vcf-api.c file
htslib/htslib-1.15.1/test/test-vcf-api.out file
htslib/htslib-1.15.1/test/test-vcf-hdr-in.vcf file
htslib/htslib-1.15.1/test/test-vcf-hdr.out file
htslib/htslib-1.15.1/test/test-vcf-sweep.c file
htslib/htslib-1.15.1/test/test-vcf-sweep.out file
htslib/htslib-1.15.1/test/test.pl file
htslib/htslib-1.15.1/test/test_bgzf.c file
htslib/htslib-1.15.1/test/test_expr.c file
htslib/htslib-1.15.1/test/test_index.c file
htslib/htslib-1.15.1/test/test_introspection.c file
htslib/htslib-1.15.1/test/test_kfunc.c file
htslib/htslib-1.15.1/test/test_kstring.c file
htslib/htslib-1.15.1/test/test_mod.c file
htslib/htslib-1.15.1/test/test_realn.c file
htslib/htslib-1.15.1/test/test_str2int.c file
htslib/htslib-1.15.1/test/test_view.c file
htslib/htslib-1.15.1/test/thrash_threads1.c file
htslib/htslib-1.15.1/test/thrash_threads2.c file
htslib/htslib-1.15.1/test/thrash_threads3.c file
htslib/htslib-1.15.1/test/thrash_threads4.c file
htslib/htslib-1.15.1/test/thrash_threads5.c file
htslib/htslib-1.15.1/test/thrash_threads6.c file
htslib/htslib-1.15.1/test/thrash_threads7.c file
htslib/htslib-1.15.1/test/thread_pool.md file
htslib/htslib-1.15.1/test/vcf_meta_meta.vcf file
htslib/htslib-1.15.1/test/with-shlib.sh file
htslib/htslib-1.15.1/test/xx#blank.sam file
htslib/htslib-1.15.1/test/xx#large_aux.sam file
htslib/htslib-1.15.1/test/xx#large_aux2.sam file
htslib/htslib-1.15.1/test/xx#large_aux_java.cram file
htslib/htslib-1.15.1/test/xx#MD.sam file
htslib/htslib-1.15.1/test/xx#MD2.sam file
htslib/htslib-1.15.1/test/xx#minimal.sam file
htslib/htslib-1.15.1/test/xx#pair.sam file
htslib/htslib-1.15.1/test/xx#repeated.sam file
htslib/htslib-1.15.1/test/xx#rg.sam file
htslib/htslib-1.15.1/test/xx#tlen.sam file
htslib/htslib-1.15.1/test/xx#tlen2.sam file
htslib/htslib-1.15.1/test/xx#triplet.sam file
htslib/htslib-1.15.1/test/xx#unsorted.sam file
htslib/htslib-1.15.1/test/xx.fa file
htslib/htslib-1.15.1/test/xx.fa.fai file
htslib/htslib-1.15.1/test/base_mods directory
htslib/htslib-1.15.1/test/base_mods/base-mods.sh file
htslib/htslib-1.15.1/test/base_mods/base-mods.tst file
htslib/htslib-1.15.1/test/base_mods/MM-chebi.out file
htslib/htslib-1.15.1/test/base_mods/MM-chebi.sam file
htslib/htslib-1.15.1/test/base_mods/MM-double.out file
htslib/htslib-1.15.1/test/base_mods/MM-double.sam file
htslib/htslib-1.15.1/test/base_mods/MM-multi.out file
htslib/htslib-1.15.1/test/base_mods/MM-multi.sam file
htslib/htslib-1.15.1/test/base_mods/MM-orient.sam file
htslib/htslib-1.15.1/test/base_mods/MM-pileup.out file
htslib/htslib-1.15.1/test/base_mods/MM-pileup.sam file
htslib/htslib-1.15.1/test/base_mods/MM-pileup2.out file
htslib/htslib-1.15.1/test/base_mods/MM-pileup2.sam file
htslib/htslib-1.15.1/test/bcf-sr directory
htslib/htslib-1.15.1/test/bcf-sr/merge.noidx.a.vcf file
htslib/htslib-1.15.1/test/bcf-sr/merge.noidx.abc.expected.out file
htslib/htslib-1.15.1/test/bcf-sr/merge.noidx.b.vcf file
htslib/htslib-1.15.1/test/bcf-sr/merge.noidx.c.vcf file
htslib/htslib-1.15.1/test/bcf-sr/merge.noidx.hdr_order.vcf file
htslib/htslib-1.15.1/test/bcf-sr/merge.noidx.rec_order.vcf file
htslib/htslib-1.15.1/test/fastq directory
htslib/htslib-1.15.1/test/fastq/fastq.tst file
htslib/htslib-1.15.1/test/fastq/filter_casava-q.sam file
htslib/htslib-1.15.1/test/fastq/filter_casava.fa file
htslib/htslib-1.15.1/test/fastq/filter_casava.fq file
htslib/htslib-1.15.1/test/fastq/filter_casava.sam file
htslib/htslib-1.15.1/test/fastq/inter_aux-q.sam file
htslib/htslib-1.15.1/test/fastq/inter_aux.sam file
htslib/htslib-1.15.1/test/fastq/inter_casava-q.sam file
htslib/htslib-1.15.1/test/fastq/inter_casava.sam file
htslib/htslib-1.15.1/test/fastq/inter_casavaOX-q.sam file
htslib/htslib-1.15.1/test/fastq/inter_casavaOX.sam file
htslib/htslib-1.15.1/test/fastq/inter_noaux-q.sam file
htslib/htslib-1.15.1/test/fastq/inter_noaux.sam file
htslib/htslib-1.15.1/test/fastq/interleaved.fa file
htslib/htslib-1.15.1/test/fastq/interleaved.fq file
htslib/htslib-1.15.1/test/fastq/interleaved_casava.fa file
htslib/htslib-1.15.1/test/fastq/interleaved_casava.fq file
htslib/htslib-1.15.1/test/fastq/minimal-q.sam file
htslib/htslib-1.15.1/test/fastq/minimal.fa file
htslib/htslib-1.15.1/test/fastq/minimal.fq file
htslib/htslib-1.15.1/test/fastq/minimal.sam file
htslib/htslib-1.15.1/test/fastq/multiline-q.sam file
htslib/htslib-1.15.1/test/fastq/multiline.fa file
htslib/htslib-1.15.1/test/fastq/multiline.fq file
htslib/htslib-1.15.1/test/fastq/multiline.sam file
htslib/htslib-1.15.1/test/fastq/name2-q.sam file
htslib/htslib-1.15.1/test/fastq/name2.fa file
htslib/htslib-1.15.1/test/fastq/name2.fq file
htslib/htslib-1.15.1/test/fastq/name2.sam file
htslib/htslib-1.15.1/test/fastq/r1-q.sam file
htslib/htslib-1.15.1/test/fastq/r1.fa file
htslib/htslib-1.15.1/test/fastq/r1.fq file
htslib/htslib-1.15.1/test/fastq/r1.sam file
htslib/htslib-1.15.1/test/fastq/r2-q.sam file
htslib/htslib-1.15.1/test/fastq/r2.fa file
htslib/htslib-1.15.1/test/fastq/r2.fq file
htslib/htslib-1.15.1/test/fastq/r2.sam file
htslib/htslib-1.15.1/test/fastq/single.fa file
htslib/htslib-1.15.1/test/fastq/single.fq file
htslib/htslib-1.15.1/test/fastq/single_aux-q.sam file
htslib/htslib-1.15.1/test/fastq/single_aux.sam file
htslib/htslib-1.15.1/test/fastq/single_noaux-q.sam file
htslib/htslib-1.15.1/test/fastq/single_noaux.sam file
htslib/htslib-1.15.1/test/fastq/test-fastq.sh file
htslib/htslib-1.15.1/test/fuzz directory
htslib/htslib-1.15.1/test/fuzz/hts_open_fuzzer.c file
htslib/htslib-1.15.1/test/longrefs directory
htslib/htslib-1.15.1/test/longrefs/index.expected1.vcf file
htslib/htslib-1.15.1/test/longrefs/index.expected2.vcf file
htslib/htslib-1.15.1/test/longrefs/index.vcf file
htslib/htslib-1.15.1/test/longrefs/longref.sam file
htslib/htslib-1.15.1/test/longrefs/longref_itr.expected.sam file
htslib/htslib-1.15.1/test/longrefs/longref_multi.expected.sam file
htslib/htslib-1.15.1/test/maintainer directory
htslib/htslib-1.15.1/test/maintainer/check_copyright.pl file
htslib/htslib-1.15.1/test/maintainer/check_spaces.pl file
htslib/htslib-1.15.1/test/mpileup directory
htslib/htslib-1.15.1/test/mpileup/c1#pad1.out file
htslib/htslib-1.15.1/test/mpileup/c1#pad1.sam file
htslib/htslib-1.15.1/test/mpileup/c1#pad2.out file
htslib/htslib-1.15.1/test/mpileup/c1#pad2.sam file
htslib/htslib-1.15.1/test/mpileup/c1#pad3.out file
htslib/htslib-1.15.1/test/mpileup/c1#pad3.sam file
htslib/htslib-1.15.1/test/mpileup/mp_D.out file
htslib/htslib-1.15.1/test/mpileup/mp_D.sam file
htslib/htslib-1.15.1/test/mpileup/mp_DI.out file
htslib/htslib-1.15.1/test/mpileup/mp_DI.sam file
htslib/htslib-1.15.1/test/mpileup/mp_I.out file
htslib/htslib-1.15.1/test/mpileup/mp_I.sam file
htslib/htslib-1.15.1/test/mpileup/mp_ID.out file
htslib/htslib-1.15.1/test/mpileup/mp_ID.sam file
htslib/htslib-1.15.1/test/mpileup/mp_N.out file
htslib/htslib-1.15.1/test/mpileup/mp_N.sam file
htslib/htslib-1.15.1/test/mpileup/mp_N2.out file
htslib/htslib-1.15.1/test/mpileup/mp_N2.sam file
htslib/htslib-1.15.1/test/mpileup/mp_P.out file
htslib/htslib-1.15.1/test/mpileup/mp_P.sam file
htslib/htslib-1.15.1/test/mpileup/mpileup.tst file
htslib/htslib-1.15.1/test/mpileup/small.bam file
htslib/htslib-1.15.1/test/mpileup/small.out file
htslib/htslib-1.15.1/test/mpileup/test-pileup.sh file
htslib/htslib-1.15.1/test/sam_filter directory
htslib/htslib-1.15.1/test/sam_filter/filter.sh file
htslib/htslib-1.15.1/test/sam_filter/filter.tst file
htslib/htslib-1.15.1/test/sam_filter/func1.out file
htslib/htslib-1.15.1/test/sam_filter/func2.out file
htslib/htslib-1.15.1/test/sam_filter/func3.out file
htslib/htslib-1.15.1/test/sam_filter/func4.out file
htslib/htslib-1.15.1/test/sam_filter/int1.out file
htslib/htslib-1.15.1/test/sam_filter/int2.out file
htslib/htslib-1.15.1/test/sam_filter/int3.out file
htslib/htslib-1.15.1/test/sam_filter/string1.out file
htslib/htslib-1.15.1/test/sam_filter/string2.out file
htslib/htslib-1.15.1/test/sam_filter/string3.out file
htslib/htslib-1.15.1/test/sam_filter/string4.out file
htslib/htslib-1.15.1/test/sam_filter/string5.out file
htslib/htslib-1.15.1/test/sam_filter/string6.out file
htslib/htslib-1.15.1/test/sam_filter/string7.out file
htslib/htslib-1.15.1/test/tabix directory
htslib/htslib-1.15.1/test/tabix/bed_file.bed file
htslib/htslib-1.15.1/test/tabix/bed_file.separate.out file
htslib/htslib-1.15.1/test/tabix/bed_file.Y.100200.out file
htslib/htslib-1.15.1/test/tabix/gff_file.gff file
htslib/htslib-1.15.1/test/tabix/gff_file.X.2934832.2935190.out file
htslib/htslib-1.15.1/test/tabix/large_chr.20.1.2147483647.out file
htslib/htslib-1.15.1/test/tabix/large_chr.vcf file
htslib/htslib-1.15.1/test/tabix/tabix.tst file
htslib/htslib-1.15.1/test/tabix/test-tabix.sh file
htslib/htslib-1.15.1/test/tabix/vcf_file.1.3000151.out file
htslib/htslib-1.15.1/test/tabix/vcf_file.2.3199812.out file
htslib/htslib-1.15.1/test/tabix/vcf_file.bcf file
htslib/htslib-1.15.1/test/tabix/vcf_file.vcf file
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autoconf-simple-exception-2.0 Autoconf simple exception to GPL-2.0 Copyleft Limited Free Software Foundation (FSF) https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/autoconf-simple-exception-2.0.LICENSE https://scancode-licensedb.aboutcode.org/autoconf-simple-exception-2.0 https://git.savannah.gnu.org/gitweb/?p=config.git;a=blob;f=config.guess;h=a7448442748cc6f98a066d2d1051fad3b043761a;hb=HEAD Autoconf-exception-generic https://spdx.org/licenses/Autoconf-exception-generic
bsd-new BSD-3-Clause Permissive Regents of the University of California https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/bsd-new.LICENSE https://scancode-licensedb.aboutcode.org/bsd-new http://www.opensource.org/licenses/BSD-3-Clause http://www.opensource.org/licenses/BSD-3-Clause BSD-3-Clause https://spdx.org/licenses/BSD-3-Clause
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