| python-ruffus |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/0001-Fix-doc-build-with-Sphinx-4.patch |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/python-ruffus.spec |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4-SPECPARTS |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4.tar.gz |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/sources |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/use_libjs-mathjax.patch |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4 |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/CHANGES.TXT |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/LICENSE.TXT |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/MANIFEST.in |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/PKG-INFO |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/README.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/setup.cfg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/setup.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/USAGE.TXT |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/cheatsheet.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/conf.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/contents.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/contributing.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/design.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/faq.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/gallery.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/global.inc |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/glossary.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/history.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/implementation_notes.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/installation.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/make.bat |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/Makefile |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/manual_follows1.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/pipeline_functions.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/propset |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/proxy_logger.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/regenerate_figures |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/release.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/task.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/todo.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/why_ruffus.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/_templates |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/_templates/index.html |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/_templates/layout.html |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/dot |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/dot/all.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/dot/non_dag.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/dot/task17.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/dot/task17_from_task9.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/dot/task25_from_task9.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/jpg |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/jpg/all.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/jpg/all_sm.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/jpg/non_dag.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/jpg/non_dag_sm.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/jpg/task17.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/jpg/task17_from_task9.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/jpg/task17_from_task9_sm.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/jpg/task17_sm.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/jpg/task25_from_task9.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/jpg/task25_from_task9_sm.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/png |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/png/all.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/png/non_dag.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/png/task17.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/png/task17_from_task9.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/png/task25_from_task9.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/svg |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/svg/all.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/svg/non_dag.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/svg/task17.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/svg/task17_from_task9.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/complex_dags/svg/task25_from_task9.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/active_if.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/check_if_uptodate.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/collate.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/combinations.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/combinations_with_replacement.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/decorators.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/files.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/files_ex.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/files_re.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/follows.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/graphviz.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/indicator_objects.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/jobs_limit.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/merge.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/mkdir.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/originate.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/parallel.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/permutations.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/posttask.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/product.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/split.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/subdivide.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/todo.sphinx |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/transform.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/decorators/transform_ex.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/examples |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/examples/paired_end_data.py.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/examples/bioinformatics |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/examples/bioinformatics/index.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/examples/bioinformatics/part1_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/examples/bioinformatics/part2.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/examples/bioinformatics/part2_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/bestiary_combinatorics.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/bestiary_decorators.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/bestiary_transform.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/colour_schemes.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/complete.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/complex_conceptual.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/complex_file_dag.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/complex_ruffus.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/design.file_based_workflow.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/design.file_based_workflow.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/design.task_based_workflow.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/design.task_based_workflow.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/examples_bioinformatics_before.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/examples_bioinformatics_complete.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/examples_bioinformatics_error.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/examples_bioinformatics_merge.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/examples_bioinformatics_pipeline.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/examples_bioinformatics_split.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/examples_bioinformatics_transform.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/favicon16.ico |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/flowchart_colour_schemes.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/flowchart_colour_schemes.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/front_page_flowchart.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/history_html_flowchart.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/history_html_flowchart.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/jobs_limit.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/jobs_limit2.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/logo.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/logo64.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart.png.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart1.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart1.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart2.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart2.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart3.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart3.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart4.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart4.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart_intro.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart_intro.png.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart_legend.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_dependencies_flowchart_legend.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_exceptions.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_follows1.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_follows1.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_follows1.png.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_split_merge_example.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_transform.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/manual_transform_complex_outputs.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/pretty_flowchart.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/pretty_flowchart.png.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_complex_flowchart.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_complex_flowchart.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_complex_flowchart.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_complex_flowchart_error.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_complex_flowchart_error.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_complex_flowchart_error_with_key.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_complex_flowchart_with_key.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_decorator_syntax.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_files1.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_files2.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_files3.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_files4.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_files5.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_flowchart_legend.dot |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_flowchart_legend.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_follows.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_hello_world.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_hello_world_output.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_intro_follows.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_merge1.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_merge2.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_pipeline_printout1.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_pipeline_printout2.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_pipeline_printout3.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_posttask.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_split.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_stage4_after.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_stage4_before.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_stage5_after.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_stage5_before.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_stage5_flowchart.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_step2_ex1.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_step2_ex2.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_step3 copy.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_step3.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_step4.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_step5.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_step5_sans_key.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_transform.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/simple_tutorial_zoo_animals_formatter_example.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/small_logo.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/subpipeline_example.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/theoretical_pipeline_schematic.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/transform_1_to_1_example.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/tutorial_complete.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/tutorial_force_from_task1.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/tutorial_four_stage_pipeline.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/tutorial_key.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/tutorial_key.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/tutorial_maximal_mode.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/tutorial_minimal_mode.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/tutorial_pipeline_key.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/tutorial_ruffus_files.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/tutorial_step1_decorator_syntax.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/tutorial_step1_follows.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/web_front_page.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/wikimedia_bandedkrait.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/wikimedia_cyl_ruffus.jpg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/gallery |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/gallery/gallery_big_pipeline.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/gallery/gallery_big_pipeline.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/gallery/gallery_dless.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/gallery/gallery_dless.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/gallery/gallery_dless.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/gallery/gallery_rna_seq.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/gallery/gallery_rna_seq.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/gallery/gallery_snp_annotation.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/gallery/gallery_snp_annotation.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/gallery/gallery_snp_annotation_consequences.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/gallery/gallery_snp_annotation_consequences.svg |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/src |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/src/Backup_of_complex_file_dag.cdr |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/src/Backup_of_complex_pipeline.cdr |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/src/complex_conceptual.cdr |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/src/complex_file_dag.cdr |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/src/complex_pipeline.cdr |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/images/src/key.cdr |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/static_data |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/static_data/favicon32.ico |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/static_data/ruffus.css |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/static_data/ruffus.pdf |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/static_data/small_logo.png |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/static_data/example_scripts |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/static_data/example_scripts/complicated_example.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/static_data/example_scripts/intermediate_example.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/static_data/example_scripts/play_with_colours.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/static_data/example_scripts/ruffus_template.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/static_data/example_scripts/simpler.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_syntax.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_syntax_worked_example.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_syntax_worked_example_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/active_if.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/check_if_uptodate.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/checkpointing.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/checkpointing_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/combinatorics.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/combinatorics_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/command_line.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/decorators_compendium.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/dependencies.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/deprecated_files.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/deprecated_files_re.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/exceptions.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/flowchart_colours.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/flowchart_colours_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/inputs.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/inputs_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/introduction.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/introduction_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/list_of_ruffus_names.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/logging.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/logging_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/manual_chapter_numbers.inc |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/manual_contents.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/merge.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/merge_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/mkdir.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/mkdir_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/multiprocessing.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/multiprocessing_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/onthefly.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/onthefly_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/originate.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/originate_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/output_file_names.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/output_file_names_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/parallel.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/pipeline_printout.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/pipeline_printout_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/pipeline_printout_graph.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/pipeline_printout_graph_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/posttask.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/split.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/split_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/subdivide_collate.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/subdivide_collate_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/transform.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/transform_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/transform_in_parallel.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/doc/tutorials/new_tutorial/transform_in_parallel_code.rst |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/__init__.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/adjacent_pairs_iterate.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/cmdline.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/combinatorics.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/dbdict.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/drmaa_wrapper.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/file_name_parameters.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/graph.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/parse_old_style_ruffus.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/print_dependencies.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/proxy_logger.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/ruffus_exceptions.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/ruffus_utility.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/ruffus_version.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/task.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test |
directory |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/check_subpipeline_cmdline.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/complicated_example.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/create_test_script_from_dependency_tree.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/draw_specified_dependency_tree.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/five_second.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/manual_test_ctrl_c_exceptions.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/manual_test_ctrl_c_exceptions_drmaa.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/manual_test_drmaa.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/play_with_colours.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/qrsh_workaround.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/run_all_unit_tests.cmd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/run_all_unit_tests3.cmd |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/simpler_with_shared_logging.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/slow_process_for_testing.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_active_if.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_branching_dependencies.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_check_if_uptodate.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_cmdline.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_collate.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_combinatorics.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_drmaa_wrapper_run_job_locally.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_empty_files_decorator.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_exceptions.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_file_name_parameters.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_files_decorator.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_filesre_combine.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_filesre_split_and_combine.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_follows_mkdir.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_functions_with_extras.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_graphviz.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_inputs_with_multiple_args_raising_exception.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_job_completion_checksums.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_job_history_with_exceptions.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_mkdir.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_N_x_M_and_collate.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_newstyle_combinatorics.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_newstyle_proxy.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_newstyle_regex_error_messages.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_pausing.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_pipeline_printout_graph.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_pool_manager.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_posttask_merge.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_proxy_logger.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_regex_error_messages.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_ruffus_utility.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_ruffus_utility_parse_task_arguments.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_runtime_data.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_softlink_uptodate.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_split_and_combine.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_split_regex_and_collate.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_split_subdivide_checkpointing.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_subpipeline.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_suffix_output_dir.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_task_file_dependencies.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_task_misc.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_transform_add_inputs.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_transform_formatter.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_transform_inputs.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_transform_with_no_re_matches.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_tutorial7.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_unicode_filenames.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_verbosity.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| python-ruffus/ruffus-2.8.4/ruffus/test/test_with_logger.py |
file |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|