Copyrights and Licenses Information

path	start	end	what	value
samtools/samtools.spec	6	6	license	mit
samtools/samtools-1.15.1/amplicon_stats.c	7	23	license	mit
samtools/samtools-1.15.1/bam.c	8	24	license	mit
samtools/samtools-1.15.1/bam.h	7	23	license	mit
samtools/samtools-1.15.1/bam2bcf.c	8	24	license	mit
samtools/samtools-1.15.1/bam2bcf.h	8	24	license	mit
samtools/samtools-1.15.1/bam2depth.c	10	26	license	mit
samtools/samtools-1.15.1/bam_addrprg.c	7	23	license	mit
samtools/samtools-1.15.1/bam_ampliconclip.c	9	25	license	mit
samtools/samtools-1.15.1/bam_ampliconclip.h	7	23	license	mit
samtools/samtools-1.15.1/bam_aux.c	8	24	license	mit
samtools/samtools-1.15.1/bam_cat.c	6	22	license	proprietary-license
samtools/samtools-1.15.1/bam_color.c	7	23	license	mit
samtools/samtools-1.15.1/bam_consensus.c	8	8	license	mit
samtools/samtools-1.15.1/bam_consensus.c	11	11	license	bsd-new
samtools/samtools-1.15.1/bam_consensus.c	13	13	license	mit
samtools/samtools-1.15.1/bam_consensus.c	16	32	license	mit
samtools/samtools-1.15.1/bam_consensus.c	39	39	license	bsd-new
samtools/samtools-1.15.1/bam_consensus.c	43	43	license	bsd-new
samtools/samtools-1.15.1/bam_consensus.c	48	72	license	bsd-new
samtools/samtools-1.15.1/bam_fastq.c	8	24	license	proprietary-license
samtools/samtools-1.15.1/bam_flags.c	7	23	license	mit
samtools/samtools-1.15.1/bam_import.c	13	29	license	mit
samtools/samtools-1.15.1/bam_index.c	9	25	license	proprietary-license
samtools/samtools-1.15.1/bam_lpileup.c	7	23	license	mit
samtools/samtools-1.15.1/bam_lpileup.h	7	23	license	mit
samtools/samtools-1.15.1/bam_markdup.c	8	24	license	mit
samtools/samtools-1.15.1/bam_markdup.c	27	27	license	mit
samtools/samtools-1.15.1/bam_mate.c	9	25	license	proprietary-license
samtools/samtools-1.15.1/bam_md.c	8	24	license	mit
samtools/samtools-1.15.1/bam_plbuf.c	7	23	license	mit
samtools/samtools-1.15.1/bam_plbuf.h	7	23	license	mit
samtools/samtools-1.15.1/bam_plcmd.c	8	24	license	mit
samtools/samtools-1.15.1/bam_quickcheck.c	7	23	license	mit
samtools/samtools-1.15.1/bam_reheader.c	8	24	license	mit
samtools/samtools-1.15.1/bam_rmdup.c	8	24	license	mit
samtools/samtools-1.15.1/bam_rmdupse.c	8	24	license	mit
samtools/samtools-1.15.1/bam_samples.c	7	23	license	mit
samtools/samtools-1.15.1/bam_sort.c	9	25	license	mit
samtools/samtools-1.15.1/bam_split.c	7	23	license	mit
samtools/samtools-1.15.1/bam_stat.c	7	23	license	mit
samtools/samtools-1.15.1/bam_tview.c	8	24	license	proprietary-license
samtools/samtools-1.15.1/bam_tview.h	8	24	license	proprietary-license
samtools/samtools-1.15.1/bam_tview_curses.c	8	24	license	proprietary-license
samtools/samtools-1.15.1/bam_tview_html.c	8	24	license	mit
samtools/samtools-1.15.1/bamshuf.c	8	24	license	mit
samtools/samtools-1.15.1/bamtk.c	7	23	license	mit
samtools/samtools-1.15.1/bedcov.c	8	24	license	mit
samtools/samtools-1.15.1/bedidx.c	8	24	license	mit
samtools/samtools-1.15.1/bedidx.h	7	23	license	mit
samtools/samtools-1.15.1/config.mk.in	7	23	license	mit
samtools/samtools-1.15.1/configure	11	12	license	fsf-free
samtools/samtools-1.15.1/configure	16	17	license	fsf-notice
samtools/samtools-1.15.1/configure	1390	1391	license	fsf-free
samtools/samtools-1.15.1/configure	1395	1396	license	fsf-notice
samtools/samtools-1.15.1/configure	2048	2072	license	gpl-3.0-plus WITH autoconf-macro-exception
samtools/samtools-1.15.1/configure	2146	2149	license	fsf-ap
samtools/samtools-1.15.1/configure	5389	5390	license	fsf-free
samtools/samtools-1.15.1/configure.ac	7	23	license	mit
samtools/samtools-1.15.1/configure.ac	39	40	license	fsf-notice
samtools/samtools-1.15.1/consensus_pileup.c	7	23	license	mit
samtools/samtools-1.15.1/consensus_pileup.h	7	23	license	mit
samtools/samtools-1.15.1/coverage.c	8	24	license	mit
samtools/samtools-1.15.1/cut_target.c	8	24	license	mit
samtools/samtools-1.15.1/dict.c	7	23	license	mit
samtools/samtools-1.15.1/faidx.c	8	24	license	mit
samtools/samtools-1.15.1/install-sh	12	32	license	x11-xconsortium
samtools/samtools-1.15.1/install-sh	35	35	license	public-domain
samtools/samtools-1.15.1/LICENSE	1	1	license	mit
samtools/samtools-1.15.1/LICENSE	5	21	license	mit
samtools/samtools-1.15.1/Makefile	6	22	license	mit
samtools/samtools-1.15.1/padding.c	9	25	license	mit
samtools/samtools-1.15.1/phase.c	8	24	license	mit
samtools/samtools-1.15.1/README	120	120	license	mit
samtools/samtools-1.15.1/README	120	120	license	mit
samtools/samtools-1.15.1/README	120	120	license	proprietary-license
samtools/samtools-1.15.1/sam_opts.c	7	23	license	mit
samtools/samtools-1.15.1/sam_opts.h	7	23	license	mit
samtools/samtools-1.15.1/sam_utils.c	7	23	license	mit
samtools/samtools-1.15.1/sam_view.c	8	24	license	proprietary-license
samtools/samtools-1.15.1/sample.c	8	24	license	mit
samtools/samtools-1.15.1/sample.h	7	23	license	mit
samtools/samtools-1.15.1/samtools.h	7	23	license	mit
samtools/samtools-1.15.1/splaysort.h	1	1	license	mit
samtools/samtools-1.15.1/splaysort.h	5	23	license	mit
samtools/samtools-1.15.1/stats.c	8	24	license	mit
samtools/samtools-1.15.1/stats_isize.c	7	23	license	mit
samtools/samtools-1.15.1/stats_isize.h	7	23	license	mit
samtools/samtools-1.15.1/tmp_file.c	9	25	license	mit
samtools/samtools-1.15.1/tmp_file.h	9	25	license	mit
samtools/samtools-1.15.1/version.sh	8	24	license	mit
samtools/samtools-1.15.1/doc/samtools-addreplacerg.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-ampliconclip.1	11	27	license	mit
samtools/samtools-1.15.1/doc/samtools-ampliconstats.1	10	26	license	mit
samtools/samtools-1.15.1/doc/samtools-bedcov.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-calmd.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-cat.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-collate.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-consensus.1	10	26	license	mit
samtools/samtools-1.15.1/doc/samtools-coverage.1	10	26	license	mit
samtools/samtools-1.15.1/doc/samtools-depad.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-depth.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-dict.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-faidx.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-fasta.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-fixmate.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-flags.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-flagstat.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-fqidx.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-head.1	10	26	license	mit
samtools/samtools-1.15.1/doc/samtools-idxstats.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-import.1	10	26	license	mit
samtools/samtools-1.15.1/doc/samtools-index.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-markdup.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-merge.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-mpileup.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-phase.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-quickcheck.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-reheader.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-rmdup.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-samples.1	11	27	license	mit
samtools/samtools-1.15.1/doc/samtools-sort.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-split.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-stats.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-targetcut.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-tview.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools-view.1	12	28	license	mit
samtools/samtools-1.15.1/doc/samtools.1	12	28	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/bcf_sr_sort.c	6	22	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/bcf_sr_sort.h	6	22	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/bgzf.c	1	1	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/bgzf.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/bgzip.1	11	27	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/bgzip.c	6	22	license	proprietary-license
samtools/samtools-1.15.1/htslib-1.15.1/builddir_vars.mk.in	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/config.mk.in	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/configure	11	12	license	fsf-free
samtools/samtools-1.15.1/htslib-1.15.1/configure	16	17	license	fsf-notice
samtools/samtools-1.15.1/htslib-1.15.1/configure	1455	1456	license	fsf-free
samtools/samtools-1.15.1/htslib-1.15.1/configure	1460	1461	license	fsf-notice
samtools/samtools-1.15.1/htslib-1.15.1/configure	6167	6168	license	fsf-free
samtools/samtools-1.15.1/htslib-1.15.1/configure.ac	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/configure.ac	39	40	license	fsf-notice
samtools/samtools-1.15.1/htslib-1.15.1/errmod.c	8	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/faidx.5	10	26	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/faidx.c	8	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/header.c	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/header.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/hfile.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/hfile_gcs.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/hfile_internal.h	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/hfile_libcurl.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/hfile_s3.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/hfile_s3_write.c	8	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/hts.c	8	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/hts_expr.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/hts_internal.h	5	21	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/hts_os.c	8	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs_bundled.mk	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs_external.mk	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/htsfile.1	9	25	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/htsfile.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/htslib-s3-plugin.7	9	25	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/htslib.mk	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/htslib_vars.mk	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/kfunc.c	1	1	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/kfunc.c	6	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/kstring.c	1	1	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/kstring.c	6	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/LICENSE	2	2	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/LICENSE	4	4	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/LICENSE	8	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/LICENSE	28	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/LICENSE	30	30	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/LICENSE	34	42	license	bsd-simplified
samtools/samtools-1.15.1/htslib-1.15.1/LICENSE	44	57	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/Makefile	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/md5.c	16	34	license	public-domain OR other-permissive
samtools/samtools-1.15.1/htslib-1.15.1/multipart.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/plugin.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/probaln.c	1	1	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/probaln.c	6	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/README	21	21	license	mit AND bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/README	21	21	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/realn.c	8	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/regidx.c	6	22	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/region.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/sam.5	10	26	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/sam.c	8	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/sam_internal.h	5	21	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/synced_bcf_reader.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/tabix.1	11	27	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/tabix.c	8	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/tbx.c	8	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/textutils.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/textutils_internal.h	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/thread_pool.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/thread_pool_internal.h	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/vcf.5	11	27	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/vcf.c	9	25	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/vcf_sweep.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/vcfutils.c	7	23	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/version.sh	8	24	license	mit
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_codecs.c	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_codecs.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_decode.c	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_decode.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_encode.c	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_encode.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_external.c	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_index.c	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_index.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_io.c	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_io.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_samtools.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_stats.c	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_stats.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_structs.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/mFILE.c	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/mFILE.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/misc.h	5	29	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/misc.h	37	60	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/open_trace_file.c	7	31	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/open_trace_file.c	38	61	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/open_trace_file.h	7	31	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/open_trace_file.h	38	61	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/os.h	5	29	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/os.h	36	59	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/pooled_alloc.c	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/pooled_alloc.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/string_alloc.c	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/cram/string_alloc.h	5	28	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs/LICENSE.md	2	2	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs/LICENSE.md	4	29	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs/LICENSE.md	31	31	license	public-domain
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs/LICENSE.md	35	35	license	public-domain
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs/LICENSE.md	39	43	license	cc0-1.0
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs/LICENSE.md	41	41	license	cc0-1.0
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs/htscodecs/arith_dynamic.c	5	31	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs/htscodecs/arith_dynamic.h	5	31	license	bsd-new
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs/htscodecs/c_simple_model.h	5	31	license	bsd-new
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samtools/samtools-1.15.1/test/dat/bam2fq.002.sam	10	25	license	mit
samtools/samtools-1.15.1/test/dat/bam2fq.003.sam	6	6	license	mit
samtools/samtools-1.15.1/test/dat/bam2fq.003.sam	10	25	license	mit
samtools/samtools-1.15.1/test/dat/bam2fq.004.sam	6	6	license	mit
samtools/samtools-1.15.1/test/dat/bam2fq.004.sam	10	25	license	mit
samtools/samtools-1.15.1/test/dat/bam2fq.005.sam	6	6	license	mit
samtools/samtools-1.15.1/test/dat/bam2fq.005.sam	10	25	license	mit
samtools/samtools-1.15.1/test/dat/bam2fq.010.sam	6	6	license	mit
samtools/samtools-1.15.1/test/dat/bam2fq.010.sam	10	25	license	mit
samtools/samtools-1.15.1/test/dat/bam2fq.013.sam	2	2	license	mit
samtools/samtools-1.15.1/test/dat/bam2fq.013.sam	6	21	license	mit
samtools/samtools-1.15.1/test/dat/cat.hdr	4	4	license	mit
samtools/samtools-1.15.1/test/dat/cat.hdr	8	23	license	mit
samtools/samtools-1.15.1/test/dat/depad.001p.sam	3	3	license	mit
samtools/samtools-1.15.1/test/dat/depad.001p.sam	7	22	license	mit
samtools/samtools-1.15.1/test/dat/depad.001u.sam	3	3	license	mit
samtools/samtools-1.15.1/test/dat/depad.001u.sam	7	22	license	mit
samtools/samtools-1.15.1/test/dat/large_chrom.sam	9	26	license	mit AND proprietary-license
samtools/samtools-1.15.1/test/dat/view.001.01.bed	1	1	license	mit
samtools/samtools-1.15.1/test/dat/view.001.01.bed	5	21	license	mit
samtools/samtools-1.15.1/test/dat/view.001.02.bed	1	1	license	mit
samtools/samtools-1.15.1/test/dat/view.001.02.bed	5	21	license	mit
samtools/samtools-1.15.1/test/dat/view.001.sam	6	6	license	mit
samtools/samtools-1.15.1/test/dat/view.001.sam	10	25	license	mit
samtools/samtools-1.15.1/test/dat/view.002.01.bed	1	1	license	mit
samtools/samtools-1.15.1/test/dat/view.002.01.bed	5	21	license	mit
samtools/samtools-1.15.1/test/dat/view.002.02.bed	1	1	license	mit
samtools/samtools-1.15.1/test/dat/view.002.02.bed	5	21	license	mit
samtools/samtools-1.15.1/test/dat/view.002.sam	2	2	license	mit
samtools/samtools-1.15.1/test/dat/view.002.sam	6	21	license	mit
samtools/samtools-1.15.1/test/dat/view.003.expected.sam	4	4	license	mit
samtools/samtools-1.15.1/test/dat/view.003.expected.sam	8	23	license	mit
samtools/samtools-1.15.1/test/dat/view.003.sam	4	4	license	mit
samtools/samtools-1.15.1/test/dat/view.003.sam	8	23	license	mit
samtools/samtools-1.15.1/test/dat/view.004.expected.sam	7	7	license	mit
samtools/samtools-1.15.1/test/dat/view.004.expected.sam	11	26	license	mit
samtools/samtools-1.15.1/test/maintainer/check_copyright.pl	8	24	license	mit
samtools/samtools-1.15.1/test/maintainer/check_copyright.pl	80	80	license	unknown-license-reference
samtools/samtools-1.15.1/test/maintainer/check_spaces.pl	8	24	license	mit
samtools/samtools-1.15.1/test/merge/test_bam_translate.c	7	23	license	mit
samtools/samtools-1.15.1/test/merge/test_rtrans_build.c	7	23	license	mit
samtools/samtools-1.15.1/test/merge/test_trans_tbl_init.c	7	23	license	mit
samtools/samtools-1.15.1/test/reheader/1_view1.sam.expected	2	2	license	mit
samtools/samtools-1.15.1/test/reheader/1_view1.sam.expected	6	21	license	mit
samtools/samtools-1.15.1/test/reheader/2_view1.sam.expected	6	6	license	mit
samtools/samtools-1.15.1/test/reheader/2_view1.sam.expected	10	25	license	mit
samtools/samtools-1.15.1/test/reheader/3_view1.sam.expected	2	2	license	mit
samtools/samtools-1.15.1/test/reheader/3_view1.sam.expected	6	21	license	mit
samtools/samtools-1.15.1/test/reheader/4_view1.sam.expected	2	2	license	mit
samtools/samtools-1.15.1/test/reheader/4_view1.sam.expected	6	21	license	mit
samtools/samtools-1.15.1/test/reheader/5_view1.sam.expected	6	6	license	mit
samtools/samtools-1.15.1/test/reheader/5_view1.sam.expected	10	25	license	mit
samtools/samtools-1.15.1/test/reheader/hdr.sam	6	6	license	mit
samtools/samtools-1.15.1/test/reheader/hdr.sam	10	25	license	mit
samtools/samtools-1.15.1/test/split/split.expected.grp1.sam	2	2	license	mit
samtools/samtools-1.15.1/test/split/split.expected.grp1.sam	6	21	license	mit
samtools/samtools-1.15.1/test/split/split.expected.grp2.sam	2	2	license	mit
samtools/samtools-1.15.1/test/split/split.expected.grp2.sam	6	21	license	mit
samtools/samtools-1.15.1/test/split/split.expected.unk.sam	5	5	license	mit
samtools/samtools-1.15.1/test/split/split.expected.unk.sam	9	24	license	mit
samtools/samtools-1.15.1/test/split/split.sam	5	5	license	mit
samtools/samtools-1.15.1/test/split/split.sam	9	24	license	mit
samtools/samtools-1.15.1/test/split/test_count_rg.c	7	23	license	mit
samtools/samtools-1.15.1/test/split/test_expand_format_string.c	7	23	license	mit
samtools/samtools-1.15.1/test/split/test_filter_header_rg.c	7	23	license	mit
samtools/samtools-1.15.1/test/split/test_parse_args.c	7	23	license	mit
samtools/samtools-1.15.1/test/stat/11.stats.targets	1	1	license	mit
samtools/samtools-1.15.1/test/stat/11.stats.targets	5	21	license	mit
samtools/samtools-1.15.1/test/stat/11_target.sam	7	7	license	mit
samtools/samtools-1.15.1/test/stat/11_target.sam	11	26	license	mit
samtools/samtools-1.15.1/test/tview/test_get_rg_sample.c	7	23	license	mit

File Information

path	type	name	extension	date	size	sha1	md5	files_count	mime_type	file_type	programming_language	is_binary	is_text	is_archive	is_media	is_source	is_script
samtools	directory
samtools/samtools-1.15.1-SPECPARTS	directory
samtools/samtools-1.15.1.tar.bz2	file
samtools/samtools.spec	file
samtools/sources	file
samtools/samtools-1.15.1	directory
samtools/samtools-1.15.1/amplicon_stats.c	file
samtools/samtools-1.15.1/AUTHORS	file
samtools/samtools-1.15.1/bam.c	file
samtools/samtools-1.15.1/bam.h	file
samtools/samtools-1.15.1/bam2bcf.c	file
samtools/samtools-1.15.1/bam2bcf.h	file
samtools/samtools-1.15.1/bam2depth.c	file
samtools/samtools-1.15.1/bam_addrprg.c	file
samtools/samtools-1.15.1/bam_ampliconclip.c	file
samtools/samtools-1.15.1/bam_ampliconclip.h	file
samtools/samtools-1.15.1/bam_aux.c	file
samtools/samtools-1.15.1/bam_cat.c	file
samtools/samtools-1.15.1/bam_color.c	file
samtools/samtools-1.15.1/bam_consensus.c	file
samtools/samtools-1.15.1/bam_fastq.c	file
samtools/samtools-1.15.1/bam_flags.c	file
samtools/samtools-1.15.1/bam_import.c	file
samtools/samtools-1.15.1/bam_index.c	file
samtools/samtools-1.15.1/bam_lpileup.c	file
samtools/samtools-1.15.1/bam_lpileup.h	file
samtools/samtools-1.15.1/bam_markdup.c	file
samtools/samtools-1.15.1/bam_mate.c	file
samtools/samtools-1.15.1/bam_md.c	file
samtools/samtools-1.15.1/bam_plbuf.c	file
samtools/samtools-1.15.1/bam_plbuf.h	file
samtools/samtools-1.15.1/bam_plcmd.c	file
samtools/samtools-1.15.1/bam_quickcheck.c	file
samtools/samtools-1.15.1/bam_reheader.c	file
samtools/samtools-1.15.1/bam_rmdup.c	file
samtools/samtools-1.15.1/bam_rmdupse.c	file
samtools/samtools-1.15.1/bam_samples.c	file
samtools/samtools-1.15.1/bam_sort.c	file
samtools/samtools-1.15.1/bam_split.c	file
samtools/samtools-1.15.1/bam_stat.c	file
samtools/samtools-1.15.1/bam_tview.c	file
samtools/samtools-1.15.1/bam_tview.h	file
samtools/samtools-1.15.1/bam_tview_curses.c	file
samtools/samtools-1.15.1/bam_tview_html.c	file
samtools/samtools-1.15.1/bamshuf.c	file
samtools/samtools-1.15.1/bamtk.c	file
samtools/samtools-1.15.1/bedcov.c	file
samtools/samtools-1.15.1/bedidx.c	file
samtools/samtools-1.15.1/bedidx.h	file
samtools/samtools-1.15.1/ChangeLog.old	file
samtools/samtools-1.15.1/config.h.in	file
samtools/samtools-1.15.1/config.mk.in	file
samtools/samtools-1.15.1/configure	file
samtools/samtools-1.15.1/configure.ac	file
samtools/samtools-1.15.1/consensus_pileup.c	file
samtools/samtools-1.15.1/consensus_pileup.h	file
samtools/samtools-1.15.1/coverage.c	file
samtools/samtools-1.15.1/cut_target.c	file
samtools/samtools-1.15.1/dict.c	file
samtools/samtools-1.15.1/faidx.c	file
samtools/samtools-1.15.1/install-sh	file
samtools/samtools-1.15.1/LICENSE	file
samtools/samtools-1.15.1/Makefile	file
samtools/samtools-1.15.1/NEWS	file
samtools/samtools-1.15.1/padding.c	file
samtools/samtools-1.15.1/phase.c	file
samtools/samtools-1.15.1/README	file
samtools/samtools-1.15.1/sam_opts.c	file
samtools/samtools-1.15.1/sam_opts.h	file
samtools/samtools-1.15.1/sam_utils.c	file
samtools/samtools-1.15.1/sam_view.c	file
samtools/samtools-1.15.1/sample.c	file
samtools/samtools-1.15.1/sample.h	file
samtools/samtools-1.15.1/samtools.h	file
samtools/samtools-1.15.1/splaysort.h	file
samtools/samtools-1.15.1/stats.c	file
samtools/samtools-1.15.1/stats_isize.c	file
samtools/samtools-1.15.1/stats_isize.h	file
samtools/samtools-1.15.1/tmp_file.c	file
samtools/samtools-1.15.1/tmp_file.h	file
samtools/samtools-1.15.1/version.sh	file
samtools/samtools-1.15.1/doc	directory
samtools/samtools-1.15.1/doc/samtools-addreplacerg.1	file
samtools/samtools-1.15.1/doc/samtools-ampliconclip.1	file
samtools/samtools-1.15.1/doc/samtools-ampliconstats.1	file
samtools/samtools-1.15.1/doc/samtools-bedcov.1	file
samtools/samtools-1.15.1/doc/samtools-calmd.1	file
samtools/samtools-1.15.1/doc/samtools-cat.1	file
samtools/samtools-1.15.1/doc/samtools-collate.1	file
samtools/samtools-1.15.1/doc/samtools-consensus.1	file
samtools/samtools-1.15.1/doc/samtools-coverage.1	file
samtools/samtools-1.15.1/doc/samtools-depad.1	file
samtools/samtools-1.15.1/doc/samtools-depth.1	file
samtools/samtools-1.15.1/doc/samtools-dict.1	file
samtools/samtools-1.15.1/doc/samtools-faidx.1	file
samtools/samtools-1.15.1/doc/samtools-fasta.1	file
samtools/samtools-1.15.1/doc/samtools-fastq.1	file
samtools/samtools-1.15.1/doc/samtools-fixmate.1	file
samtools/samtools-1.15.1/doc/samtools-flags.1	file
samtools/samtools-1.15.1/doc/samtools-flagstat.1	file
samtools/samtools-1.15.1/doc/samtools-fqidx.1	file
samtools/samtools-1.15.1/doc/samtools-head.1	file
samtools/samtools-1.15.1/doc/samtools-idxstats.1	file
samtools/samtools-1.15.1/doc/samtools-import.1	file
samtools/samtools-1.15.1/doc/samtools-index.1	file
samtools/samtools-1.15.1/doc/samtools-markdup.1	file
samtools/samtools-1.15.1/doc/samtools-merge.1	file
samtools/samtools-1.15.1/doc/samtools-mpileup.1	file
samtools/samtools-1.15.1/doc/samtools-phase.1	file
samtools/samtools-1.15.1/doc/samtools-quickcheck.1	file
samtools/samtools-1.15.1/doc/samtools-reheader.1	file
samtools/samtools-1.15.1/doc/samtools-rmdup.1	file
samtools/samtools-1.15.1/doc/samtools-samples.1	file
samtools/samtools-1.15.1/doc/samtools-sort.1	file
samtools/samtools-1.15.1/doc/samtools-split.1	file
samtools/samtools-1.15.1/doc/samtools-stats.1	file
samtools/samtools-1.15.1/doc/samtools-targetcut.1	file
samtools/samtools-1.15.1/doc/samtools-tview.1	file
samtools/samtools-1.15.1/doc/samtools-view.1	file
samtools/samtools-1.15.1/doc/samtools.1	file
samtools/samtools-1.15.1/examples	directory
samtools/samtools-1.15.1/examples/00README.txt	file
samtools/samtools-1.15.1/examples/ex1.fa	file
samtools/samtools-1.15.1/examples/ex1.sam.gz	file
samtools/samtools-1.15.1/examples/toy.fa	file
samtools/samtools-1.15.1/examples/toy.sam	file
samtools/samtools-1.15.1/htslib-1.15.1	directory
samtools/samtools-1.15.1/htslib-1.15.1/bcf_sr_sort.c	file
samtools/samtools-1.15.1/htslib-1.15.1/bcf_sr_sort.h	file
samtools/samtools-1.15.1/htslib-1.15.1/bgzf.c	file
samtools/samtools-1.15.1/htslib-1.15.1/bgzip.1	file
samtools/samtools-1.15.1/htslib-1.15.1/bgzip.c	file
samtools/samtools-1.15.1/htslib-1.15.1/builddir_vars.mk.in	file
samtools/samtools-1.15.1/htslib-1.15.1/config.h.in	file
samtools/samtools-1.15.1/htslib-1.15.1/config.mk.in	file
samtools/samtools-1.15.1/htslib-1.15.1/configure	file
samtools/samtools-1.15.1/htslib-1.15.1/configure.ac	file
samtools/samtools-1.15.1/htslib-1.15.1/errmod.c	file
samtools/samtools-1.15.1/htslib-1.15.1/faidx.5	file
samtools/samtools-1.15.1/htslib-1.15.1/faidx.c	file
samtools/samtools-1.15.1/htslib-1.15.1/header.c	file
samtools/samtools-1.15.1/htslib-1.15.1/header.h	file
samtools/samtools-1.15.1/htslib-1.15.1/hfile.c	file
samtools/samtools-1.15.1/htslib-1.15.1/hfile_gcs.c	file
samtools/samtools-1.15.1/htslib-1.15.1/hfile_internal.h	file
samtools/samtools-1.15.1/htslib-1.15.1/hfile_libcurl.c	file
samtools/samtools-1.15.1/htslib-1.15.1/hfile_s3.c	file
samtools/samtools-1.15.1/htslib-1.15.1/hfile_s3_write.c	file
samtools/samtools-1.15.1/htslib-1.15.1/hts.c	file
samtools/samtools-1.15.1/htslib-1.15.1/hts_expr.c	file
samtools/samtools-1.15.1/htslib-1.15.1/hts_internal.h	file
samtools/samtools-1.15.1/htslib-1.15.1/hts_os.c	file
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs_bundled.mk	file
samtools/samtools-1.15.1/htslib-1.15.1/htscodecs_external.mk	file
samtools/samtools-1.15.1/htslib-1.15.1/htsfile.1	file
samtools/samtools-1.15.1/htslib-1.15.1/htsfile.c	file
samtools/samtools-1.15.1/htslib-1.15.1/htslib-s3-plugin.7	file
samtools/samtools-1.15.1/htslib-1.15.1/htslib.mk	file
samtools/samtools-1.15.1/htslib-1.15.1/htslib.pc.in	file
samtools/samtools-1.15.1/htslib-1.15.1/htslib_vars.mk	file
samtools/samtools-1.15.1/htslib-1.15.1/INSTALL	file
samtools/samtools-1.15.1/htslib-1.15.1/kfunc.c	file
samtools/samtools-1.15.1/htslib-1.15.1/kstring.c	file
samtools/samtools-1.15.1/htslib-1.15.1/LICENSE	file
samtools/samtools-1.15.1/htslib-1.15.1/Makefile	file
samtools/samtools-1.15.1/htslib-1.15.1/md5.c	file
samtools/samtools-1.15.1/htslib-1.15.1/multipart.c	file
samtools/samtools-1.15.1/htslib-1.15.1/NEWS	file
samtools/samtools-1.15.1/htslib-1.15.1/plugin.c	file
samtools/samtools-1.15.1/htslib-1.15.1/probaln.c	file
samtools/samtools-1.15.1/htslib-1.15.1/README	file
samtools/samtools-1.15.1/htslib-1.15.1/README.large_positions.md	file
samtools/samtools-1.15.1/htslib-1.15.1/realn.c	file
samtools/samtools-1.15.1/htslib-1.15.1/regidx.c	file
samtools/samtools-1.15.1/htslib-1.15.1/region.c	file
samtools/samtools-1.15.1/htslib-1.15.1/sam.5	file
samtools/samtools-1.15.1/htslib-1.15.1/sam.c	file
samtools/samtools-1.15.1/htslib-1.15.1/sam_internal.h	file
samtools/samtools-1.15.1/htslib-1.15.1/synced_bcf_reader.c	file
samtools/samtools-1.15.1/htslib-1.15.1/tabix.1	file
samtools/samtools-1.15.1/htslib-1.15.1/tabix.c	file
samtools/samtools-1.15.1/htslib-1.15.1/tbx.c	file
samtools/samtools-1.15.1/htslib-1.15.1/textutils.c	file
samtools/samtools-1.15.1/htslib-1.15.1/textutils_internal.h	file
samtools/samtools-1.15.1/htslib-1.15.1/thread_pool.c	file
samtools/samtools-1.15.1/htslib-1.15.1/thread_pool_internal.h	file
samtools/samtools-1.15.1/htslib-1.15.1/vcf.5	file
samtools/samtools-1.15.1/htslib-1.15.1/vcf.c	file
samtools/samtools-1.15.1/htslib-1.15.1/vcf_sweep.c	file
samtools/samtools-1.15.1/htslib-1.15.1/vcfutils.c	file
samtools/samtools-1.15.1/htslib-1.15.1/version.sh	file
samtools/samtools-1.15.1/htslib-1.15.1/cram	directory
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram.h	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_codecs.c	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_codecs.h	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_decode.c	file
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samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_encode.c	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_encode.h	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_external.c	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_index.c	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_index.h	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_io.c	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_io.h	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_samtools.h	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_stats.c	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_stats.h	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/cram_structs.h	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/mFILE.c	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/mFILE.h	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/misc.h	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/open_trace_file.c	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/open_trace_file.h	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/os.h	file
samtools/samtools-1.15.1/htslib-1.15.1/cram/pooled_alloc.c	file
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samtools/samtools-1.15.1/test/bam2fq/11.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/12.1.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/12.2.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/12.i.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/12.s.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/13.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/14.0.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/14.i1.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/14.i2.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/2.1.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/2.2.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/2.s.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/3.1.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/3.2.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/3.s.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/4.1.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/4.2.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/4.s.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/5.1.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/5.2.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/5.s.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/6.1.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/6.2.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/6.s.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/7.1.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/7.2.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/7.s.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/8.1.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/8.2.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/8.i.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/8.s.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/9.1.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/9.2.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/bc.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/bc10.fq.expected	file
samtools/samtools-1.15.1/test/bam2fq/bc_split.fq.expected	file
samtools/samtools-1.15.1/test/bedcov	directory
samtools/samtools-1.15.1/test/bedcov/bedcov.bam	file
samtools/samtools-1.15.1/test/bedcov/bedcov.bam.bai	file
samtools/samtools-1.15.1/test/bedcov/bedcov.bed	file
samtools/samtools-1.15.1/test/bedcov/bedcov.expected	file
samtools/samtools-1.15.1/test/bedcov/bedcov_gG.bed	file
samtools/samtools-1.15.1/test/bedcov/bedcov_gG.expected	file
samtools/samtools-1.15.1/test/bedcov/bedcov_j.expected	file
samtools/samtools-1.15.1/test/collate	directory
samtools/samtools-1.15.1/test/collate/1_fast_collate.sam.expected	file
samtools/samtools-1.15.1/test/collate/2_fast_collate_with_tmp_used.sam.expected	file
samtools/samtools-1.15.1/test/collate/collate.expected.sam	file
samtools/samtools-1.15.1/test/collate/fast_collate.sam	file
samtools/samtools-1.15.1/test/consensus	directory
samtools/samtools-1.15.1/test/consensus/consen1.sam	file
samtools/samtools-1.15.1/test/consensus/consen2.sam	file
samtools/samtools-1.15.1/test/consensus/consen3.sam	file
samtools/samtools-1.15.1/test/consensus/consensus.reg	file
samtools/samtools-1.15.1/test/consensus/expected	directory
samtools/samtools-1.15.1/test/consensus/expected/1.out	file
samtools/samtools-1.15.1/test/consensus/expected/10.1q.out	file
samtools/samtools-1.15.1/test/consensus/expected/10q.out	file
samtools/samtools-1.15.1/test/consensus/expected/11.3p.out	file
samtools/samtools-1.15.1/test/consensus/expected/11.3q.out	file
samtools/samtools-1.15.1/test/consensus/expected/11.4p.out	file
samtools/samtools-1.15.1/test/consensus/expected/11.4q.out	file
samtools/samtools-1.15.1/test/consensus/expected/11.6p.out	file
samtools/samtools-1.15.1/test/consensus/expected/11.6q.out	file
samtools/samtools-1.15.1/test/consensus/expected/12p.out	file
samtools/samtools-1.15.1/test/consensus/expected/12q.out	file
samtools/samtools-1.15.1/test/consensus/expected/13p.out	file
samtools/samtools-1.15.1/test/consensus/expected/13q.out	file
samtools/samtools-1.15.1/test/consensus/expected/14p.out	file
samtools/samtools-1.15.1/test/consensus/expected/14q.out	file
samtools/samtools-1.15.1/test/consensus/expected/15p.out	file
samtools/samtools-1.15.1/test/consensus/expected/16p.out	file
samtools/samtools-1.15.1/test/consensus/expected/16q.out	file
samtools/samtools-1.15.1/test/consensus/expected/17q.out	file
samtools/samtools-1.15.1/test/consensus/expected/18p.out	file
samtools/samtools-1.15.1/test/consensus/expected/18q.out	file
samtools/samtools-1.15.1/test/consensus/expected/19p.out	file
samtools/samtools-1.15.1/test/consensus/expected/19q.out	file
samtools/samtools-1.15.1/test/consensus/expected/1p.out	file
samtools/samtools-1.15.1/test/consensus/expected/1q.out	file
samtools/samtools-1.15.1/test/consensus/expected/2.out	file
samtools/samtools-1.15.1/test/consensus/expected/20p.out	file
samtools/samtools-1.15.1/test/consensus/expected/21p.out	file
samtools/samtools-1.15.1/test/consensus/expected/2p.out	file
samtools/samtools-1.15.1/test/consensus/expected/2q.out	file
samtools/samtools-1.15.1/test/consensus/expected/3.out	file
samtools/samtools-1.15.1/test/consensus/expected/3q.out	file
samtools/samtools-1.15.1/test/consensus/expected/4.out	file
samtools/samtools-1.15.1/test/consensus/expected/4p.out	file
samtools/samtools-1.15.1/test/consensus/expected/4q.out	file
samtools/samtools-1.15.1/test/consensus/expected/5p.out	file
samtools/samtools-1.15.1/test/consensus/expected/5q.out	file
samtools/samtools-1.15.1/test/consensus/expected/6p.out	file
samtools/samtools-1.15.1/test/consensus/expected/6q.out	file
samtools/samtools-1.15.1/test/consensus/expected/7p.out	file
samtools/samtools-1.15.1/test/consensus/expected/7q.out	file
samtools/samtools-1.15.1/test/consensus/expected/8p.out	file
samtools/samtools-1.15.1/test/consensus/expected/8q.out	file
samtools/samtools-1.15.1/test/consensus/expected/9.1p.out	file
samtools/samtools-1.15.1/test/consensus/expected/9.1q.out	file
samtools/samtools-1.15.1/test/consensus/expected/9p.out	file
samtools/samtools-1.15.1/test/consensus/expected/9q.out	file
samtools/samtools-1.15.1/test/consensus/expected/empty.out	file
samtools/samtools-1.15.1/test/dat	directory
samtools/samtools-1.15.1/test/dat/bam2fq.001.sam	file
samtools/samtools-1.15.1/test/dat/bam2fq.002.sam	file
samtools/samtools-1.15.1/test/dat/bam2fq.003.sam	file
samtools/samtools-1.15.1/test/dat/bam2fq.004.sam	file
samtools/samtools-1.15.1/test/dat/bam2fq.005.sam	file
samtools/samtools-1.15.1/test/dat/bam2fq.010.sam	file
samtools/samtools-1.15.1/test/dat/bam2fq.013.sam	file
samtools/samtools-1.15.1/test/dat/bam2fq.014.sam	file
samtools/samtools-1.15.1/test/dat/bam2fq.703.sam	file
samtools/samtools-1.15.1/test/dat/cat.hdr	file
samtools/samtools-1.15.1/test/dat/depad.001.fa	file
samtools/samtools-1.15.1/test/dat/depad.001.fa.fai	file
samtools/samtools-1.15.1/test/dat/depad.001p.sam	file
samtools/samtools-1.15.1/test/dat/depad.001u.sam	file
samtools/samtools-1.15.1/test/dat/dict.alias.fa	file
samtools/samtools-1.15.1/test/dat/dict.alias.out	file
samtools/samtools-1.15.1/test/dat/dict.fa	file
samtools/samtools-1.15.1/test/dat/dict.out	file
samtools/samtools-1.15.1/test/dat/empty.expected	file
samtools/samtools-1.15.1/test/dat/large_chrom.out	file
samtools/samtools-1.15.1/test/dat/large_chrom.sam	file
samtools/samtools-1.15.1/test/dat/large_chrom_bai_index.err	file
samtools/samtools-1.15.1/test/dat/mpileup.1.sam	file
samtools/samtools-1.15.1/test/dat/mpileup.2.sam	file
samtools/samtools-1.15.1/test/dat/mpileup.3.sam	file
samtools/samtools-1.15.1/test/dat/mpileup.err.1	file
samtools/samtools-1.15.1/test/dat/mpileup.out.1	file
samtools/samtools-1.15.1/test/dat/mpileup.out.2	file
samtools/samtools-1.15.1/test/dat/mpileup.out.3	file
samtools/samtools-1.15.1/test/dat/mpileup.out.4	file
samtools/samtools-1.15.1/test/dat/mpileup.out.5	file
samtools/samtools-1.15.1/test/dat/mpileup.ref.fa	file
samtools/samtools-1.15.1/test/dat/mpileup.ref.fa.fai	file
samtools/samtools-1.15.1/test/dat/test_input_1_a.bam	file
samtools/samtools-1.15.1/test/dat/test_input_1_a.bam.bai.expected	file
samtools/samtools-1.15.1/test/dat/test_input_1_a.cram	file
samtools/samtools-1.15.1/test/dat/test_input_1_a.sam	file
samtools/samtools-1.15.1/test/dat/test_input_1_a_regex.sam	file
samtools/samtools-1.15.1/test/dat/test_input_1_ab.X.expected	file
samtools/samtools-1.15.1/test/dat/test_input_1_b.bam	file
samtools/samtools-1.15.1/test/dat/test_input_1_b.sam	file
samtools/samtools-1.15.1/test/dat/test_input_1_b.X.expected	file
samtools/samtools-1.15.1/test/dat/test_input_1_b_regex.sam	file
samtools/samtools-1.15.1/test/dat/test_input_1_c.bam	file
samtools/samtools-1.15.1/test/dat/test_input_1_c.sam	file
samtools/samtools-1.15.1/test/dat/test_input_1_d.sam	file
samtools/samtools-1.15.1/test/dat/view.001.01.bed	file
samtools/samtools-1.15.1/test/dat/view.001.02.bed	file
samtools/samtools-1.15.1/test/dat/view.001.fa	file
samtools/samtools-1.15.1/test/dat/view.001.fa.fai	file
samtools/samtools-1.15.1/test/dat/view.001.sam	file
samtools/samtools-1.15.1/test/dat/view.002.01.bed	file
samtools/samtools-1.15.1/test/dat/view.002.02.bed	file
samtools/samtools-1.15.1/test/dat/view.002.fa	file
samtools/samtools-1.15.1/test/dat/view.002.fa.fai	file
samtools/samtools-1.15.1/test/dat/view.002.sam	file
samtools/samtools-1.15.1/test/dat/view.003.expected.sam	file
samtools/samtools-1.15.1/test/dat/view.003.sam	file
samtools/samtools-1.15.1/test/dat/view.004.expected.sam	file
samtools/samtools-1.15.1/test/dat/view.005.expected.sam	file
samtools/samtools-1.15.1/test/dat/view.005.sam	file
samtools/samtools-1.15.1/test/dat/view.005.unmap.expected.sam	file
samtools/samtools-1.15.1/test/dat/view.fetch-pairs.bam	file
samtools/samtools-1.15.1/test/dat/view.fetch-pairs.expected.sam	file
samtools/samtools-1.15.1/test/dat/view.fetch-pairs.filter0.expected.sam	file
samtools/samtools-1.15.1/test/dat/view.fetch-pairs.filter1.expected.sam	file
samtools/samtools-1.15.1/test/dat/cram_md5	directory
samtools/samtools-1.15.1/test/dat/cram_md5/08c04d512d4797d9ba2a156c1daba468	file
samtools/samtools-1.15.1/test/dat/cram_md5/7c35feac7036c1cdef3bee0cc4b21437	file
samtools/samtools-1.15.1/test/dat/cram_md5/89b96de7acc5918c2858ef92710be7d4	file
samtools/samtools-1.15.1/test/dat/cram_md5/8a3d8deb9edd4ce3346b6061fcee6d0b	file
samtools/samtools-1.15.1/test/fixmate	directory
samtools/samtools-1.15.1/test/fixmate/1_coord_sort.sam	file
samtools/samtools-1.15.1/test/fixmate/1_coord_sort.sam.expected	file
samtools/samtools-1.15.1/test/fixmate/1_coord_sort.sam.expected.err	file
samtools/samtools-1.15.1/test/fixmate/2_isize_overflow.sam	file
samtools/samtools-1.15.1/test/fixmate/2_isize_overflow.sam.expected	file
samtools/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam	file
samtools/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam.expected	file
samtools/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam	file
samtools/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam.expected	file
samtools/samtools-1.15.1/test/fixmate/5_ct.sam	file
samtools/samtools-1.15.1/test/fixmate/5_ct.sam.expected	file
samtools/samtools-1.15.1/test/fixmate/6_ct_replace.sam	file
samtools/samtools-1.15.1/test/fixmate/6_ct_replace.sam.expected	file
samtools/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam	file
samtools/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam.expected	file
samtools/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam	file
samtools/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam.expected	file
samtools/samtools-1.15.1/test/idxstats	directory
samtools/samtools-1.15.1/test/idxstats/test_input_1_a.bam.expected	file
samtools/samtools-1.15.1/test/idxstats/test_input_1_a.bam.expected.err	file
samtools/samtools-1.15.1/test/import	directory
samtools/samtools-1.15.1/test/import/1.expected.sam	file
samtools/samtools-1.15.1/test/import/2.expected.sam	file
samtools/samtools-1.15.1/test/import/2.interleaved.fq	file
samtools/samtools-1.15.1/test/import/3.interleaved.fq	file
samtools/samtools-1.15.1/test/import/4.aux.fq	file
samtools/samtools-1.15.1/test/import/4.expected-XZ,XA,AA.sam	file
samtools/samtools-1.15.1/test/import/4.expected.sam	file
samtools/samtools-1.15.1/test/import/5-BC.expected.sam	file
samtools/samtools-1.15.1/test/import/5-i1.fq	file
samtools/samtools-1.15.1/test/import/5-i2.fq	file
samtools/samtools-1.15.1/test/import/5-OX.expected.sam	file
samtools/samtools-1.15.1/test/import/5-r1.fq	file
samtools/samtools-1.15.1/test/import/5-r2.fq	file
samtools/samtools-1.15.1/test/large_pos	directory
samtools/samtools-1.15.1/test/large_pos/depth.expected.out	file
samtools/samtools-1.15.1/test/large_pos/depth_bed.expected.out	file
samtools/samtools-1.15.1/test/large_pos/longref.sam	file
samtools/samtools-1.15.1/test/large_pos/longref2.sam	file
samtools/samtools-1.15.1/test/large_pos/longref3.expected.sam	file
samtools/samtools-1.15.1/test/large_pos/longref3.sam	file
samtools/samtools-1.15.1/test/large_pos/longref_idx.expected.sam	file
samtools/samtools-1.15.1/test/large_pos/longref_name.sam	file
samtools/samtools-1.15.1/test/large_pos/merge.expected.sam	file
samtools/samtools-1.15.1/test/large_pos/test.bed	file
samtools/samtools-1.15.1/test/large_pos/tview.expected.out	file
samtools/samtools-1.15.1/test/maintainer	directory
samtools/samtools-1.15.1/test/maintainer/check_copyright.pl	file
samtools/samtools-1.15.1/test/maintainer/check_spaces.pl	file
samtools/samtools-1.15.1/test/markdup	directory
samtools/samtools-1.15.1/test/markdup/10_optical_chain.expected.sam	file
samtools/samtools-1.15.1/test/markdup/10_optical_chain.sam	file
samtools/samtools-1.15.1/test/markdup/11_optical_dup_regex.expected.sam	file
samtools/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam	file
samtools/samtools-1.15.1/test/markdup/12_optical_chain_regex.expected.sam	file
samtools/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam	file
samtools/samtools-1.15.1/test/markdup/1_name_sort.expected.sam	file
samtools/samtools-1.15.1/test/markdup/1_name_sort.expected.sam.err	file
samtools/samtools-1.15.1/test/markdup/1_name_sort.sam	file
samtools/samtools-1.15.1/test/markdup/2_bad_order.expected.sam	file
samtools/samtools-1.15.1/test/markdup/2_bad_order.expected.sam.err	file
samtools/samtools-1.15.1/test/markdup/2_bad_order.sam	file
samtools/samtools-1.15.1/test/markdup/3_missing_mc.expected.sam	file
samtools/samtools-1.15.1/test/markdup/3_missing_mc.expected.sam.err	file
samtools/samtools-1.15.1/test/markdup/3_missing_mc.sam	file
samtools/samtools-1.15.1/test/markdup/4_missing_ms.expected.sam	file
samtools/samtools-1.15.1/test/markdup/4_missing_ms.expected.sam.err	file
samtools/samtools-1.15.1/test/markdup/4_missing_ms.sam	file
samtools/samtools-1.15.1/test/markdup/5_markdup.expected.sam	file
samtools/samtools-1.15.1/test/markdup/5_markdup.sam	file
samtools/samtools-1.15.1/test/markdup/6_remove_dups.expected.sam	file
samtools/samtools-1.15.1/test/markdup/6_remove_dups.sam	file
samtools/samtools-1.15.1/test/markdup/7_mark_supp_dup.expected.sam	file
samtools/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam	file
samtools/samtools-1.15.1/test/markdup/8_optical_dup.expected.sam	file
samtools/samtools-1.15.1/test/markdup/8_optical_dup.sam	file
samtools/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.expected.sam	file
samtools/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam	file
samtools/samtools-1.15.1/test/merge	directory
samtools/samtools-1.15.1/test/merge/2.merge.expected.sam	file
samtools/samtools-1.15.1/test/merge/3.merge.expected.err	file
samtools/samtools-1.15.1/test/merge/3.merge.expected.sam	file
samtools/samtools-1.15.1/test/merge/4.merge.expected.sam	file
samtools/samtools-1.15.1/test/merge/5.merge.expected.sam	file
samtools/samtools-1.15.1/test/merge/6.merge.expected.sam	file
samtools/samtools-1.15.1/test/merge/7.merge.expected.sam	file
samtools/samtools-1.15.1/test/merge/merge.bed	file
samtools/samtools-1.15.1/test/merge/merge.bed.1.sam	file
samtools/samtools-1.15.1/test/merge/merge.bed.2.sam	file
samtools/samtools-1.15.1/test/merge/merge.bed.expected.sam	file
samtools/samtools-1.15.1/test/merge/tag.pg.merge.expected.sam	file
samtools/samtools-1.15.1/test/merge/tag.pg.n.merge.expected.sam	file
samtools/samtools-1.15.1/test/merge/test_3.fofn	file
samtools/samtools-1.15.1/test/merge/test_bam_translate.c	file
samtools/samtools-1.15.1/test/merge/test_header.sam	file
samtools/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam	file
samtools/samtools-1.15.1/test/merge/test_rtrans_build.c	file
samtools/samtools-1.15.1/test/merge/test_trans_tbl_init.c	file
samtools/samtools-1.15.1/test/mpileup	directory
samtools/samtools-1.15.1/test/mpileup/1read.bam	file
samtools/samtools-1.15.1/test/mpileup/1read.sam	file
samtools/samtools-1.15.1/test/mpileup/anomalous.sam	file
samtools/samtools-1.15.1/test/mpileup/c1#clip.bam	file
samtools/samtools-1.15.1/test/mpileup/c1#pad1.bam	file
samtools/samtools-1.15.1/test/mpileup/c1#pad2.bam	file
samtools/samtools-1.15.1/test/mpileup/c1#pad3.bam	file
samtools/samtools-1.15.1/test/mpileup/c1.fa	file
samtools/samtools-1.15.1/test/mpileup/c1.fa.fai	file
samtools/samtools-1.15.1/test/mpileup/ce#5b.bam	file
samtools/samtools-1.15.1/test/mpileup/ce#5b.bam.bai	file
samtools/samtools-1.15.1/test/mpileup/ce#5b.cram	file
samtools/samtools-1.15.1/test/mpileup/ce#5b.cram.crai	file
samtools/samtools-1.15.1/test/mpileup/ce#5b.sam	file
samtools/samtools-1.15.1/test/mpileup/ce#large_seq.bam	file
samtools/samtools-1.15.1/test/mpileup/ce#unmap.bam	file
samtools/samtools-1.15.1/test/mpileup/ce#unmap1.bam	file
samtools/samtools-1.15.1/test/mpileup/ce#unmap2.bam	file
samtools/samtools-1.15.1/test/mpileup/ce.fa	file
samtools/samtools-1.15.1/test/mpileup/ce.fa.fai	file
samtools/samtools-1.15.1/test/mpileup/deep.sam	file
samtools/samtools-1.15.1/test/mpileup/depth.reg	file
samtools/samtools-1.15.1/test/mpileup/depth_del.sam	file
samtools/samtools-1.15.1/test/mpileup/indels.sam	file
samtools/samtools-1.15.1/test/mpileup/mod1.sam	file
samtools/samtools-1.15.1/test/mpileup/mp.fa	file
samtools/samtools-1.15.1/test/mpileup/mp.fa.fai	file
samtools/samtools-1.15.1/test/mpileup/mp_D.sam	file
samtools/samtools-1.15.1/test/mpileup/mp_DI.sam	file
samtools/samtools-1.15.1/test/mpileup/mp_I.sam	file
samtools/samtools-1.15.1/test/mpileup/mp_ID.sam	file
samtools/samtools-1.15.1/test/mpileup/mp_ID_rev.sam	file
samtools/samtools-1.15.1/test/mpileup/mp_N.sam	file
samtools/samtools-1.15.1/test/mpileup/mp_N2.sam	file
samtools/samtools-1.15.1/test/mpileup/mp_P.sam	file
samtools/samtools-1.15.1/test/mpileup/mpileup-E.bam	file
samtools/samtools-1.15.1/test/mpileup/mpileup.1.bam	file
samtools/samtools-1.15.1/test/mpileup/mpileup.1.bam.bai	file
samtools/samtools-1.15.1/test/mpileup/mpileup.2.bam	file
samtools/samtools-1.15.1/test/mpileup/mpileup.3.bam	file
samtools/samtools-1.15.1/test/mpileup/mpileup.ref.fa	file
samtools/samtools-1.15.1/test/mpileup/mpileup.ref.fa.fai	file
samtools/samtools-1.15.1/test/mpileup/mpileup.reg	file
samtools/samtools-1.15.1/test/mpileup/output-BP.sam	file
samtools/samtools-1.15.1/test/mpileup/overlap.bam	file
samtools/samtools-1.15.1/test/mpileup/overlap50.sam	file
samtools/samtools-1.15.1/test/mpileup/overlapIllumina.bam	file
samtools/samtools-1.15.1/test/mpileup/regions	file
samtools/samtools-1.15.1/test/mpileup/xx#depth1.sam	file
samtools/samtools-1.15.1/test/mpileup/xx#depth2.sam	file
samtools/samtools-1.15.1/test/mpileup/xx#depth3.sam	file
samtools/samtools-1.15.1/test/mpileup/xx#depth4.sam	file
samtools/samtools-1.15.1/test/mpileup/xx#minimal.bam	file
samtools/samtools-1.15.1/test/mpileup/xx#triplet.bam	file
samtools/samtools-1.15.1/test/mpileup/xx.bed	file
samtools/samtools-1.15.1/test/mpileup/xx.bed2	file
samtools/samtools-1.15.1/test/mpileup/xx.bed3	file
samtools/samtools-1.15.1/test/mpileup/xx.fa	file
samtools/samtools-1.15.1/test/mpileup/xx.fa.fai	file
samtools/samtools-1.15.1/test/mpileup/expected	directory
samtools/samtools-1.15.1/test/mpileup/expected/1.out.f3-6.gz	file
samtools/samtools-1.15.1/test/mpileup/expected/10.out	file
samtools/samtools-1.15.1/test/mpileup/expected/11.out	file
samtools/samtools-1.15.1/test/mpileup/expected/12.out	file
samtools/samtools-1.15.1/test/mpileup/expected/13.out	file
samtools/samtools-1.15.1/test/mpileup/expected/14.out	file
samtools/samtools-1.15.1/test/mpileup/expected/15.out	file
samtools/samtools-1.15.1/test/mpileup/expected/16.out	file
samtools/samtools-1.15.1/test/mpileup/expected/17.out	file
samtools/samtools-1.15.1/test/mpileup/expected/18.out	file
samtools/samtools-1.15.1/test/mpileup/expected/19.out	file
samtools/samtools-1.15.1/test/mpileup/expected/2.out	file
samtools/samtools-1.15.1/test/mpileup/expected/20.out	file
samtools/samtools-1.15.1/test/mpileup/expected/21.out	file
samtools/samtools-1.15.1/test/mpileup/expected/22.out	file
samtools/samtools-1.15.1/test/mpileup/expected/23.out	file
samtools/samtools-1.15.1/test/mpileup/expected/24.out	file
samtools/samtools-1.15.1/test/mpileup/expected/25.out	file
samtools/samtools-1.15.1/test/mpileup/expected/26.out	file
samtools/samtools-1.15.1/test/mpileup/expected/27.out	file
samtools/samtools-1.15.1/test/mpileup/expected/28.out	file
samtools/samtools-1.15.1/test/mpileup/expected/29.out	file
samtools/samtools-1.15.1/test/mpileup/expected/3.out	file
samtools/samtools-1.15.1/test/mpileup/expected/30.out	file
samtools/samtools-1.15.1/test/mpileup/expected/31.out	file
samtools/samtools-1.15.1/test/mpileup/expected/32.out	file
samtools/samtools-1.15.1/test/mpileup/expected/33.out	file
samtools/samtools-1.15.1/test/mpileup/expected/34.out	file
samtools/samtools-1.15.1/test/mpileup/expected/35.out	file
samtools/samtools-1.15.1/test/mpileup/expected/37.out	file
samtools/samtools-1.15.1/test/mpileup/expected/38.out	file
samtools/samtools-1.15.1/test/mpileup/expected/39.out	file
samtools/samtools-1.15.1/test/mpileup/expected/4.out	file
samtools/samtools-1.15.1/test/mpileup/expected/40.out	file
samtools/samtools-1.15.1/test/mpileup/expected/41.out	file
samtools/samtools-1.15.1/test/mpileup/expected/42.out	file
samtools/samtools-1.15.1/test/mpileup/expected/43.out	file
samtools/samtools-1.15.1/test/mpileup/expected/44.out	file
samtools/samtools-1.15.1/test/mpileup/expected/45.out	file
samtools/samtools-1.15.1/test/mpileup/expected/46.out	file
samtools/samtools-1.15.1/test/mpileup/expected/47.out	file
samtools/samtools-1.15.1/test/mpileup/expected/48.out	file
samtools/samtools-1.15.1/test/mpileup/expected/49.out	file
samtools/samtools-1.15.1/test/mpileup/expected/5.out	file
samtools/samtools-1.15.1/test/mpileup/expected/50.out	file
samtools/samtools-1.15.1/test/mpileup/expected/51.out	file
samtools/samtools-1.15.1/test/mpileup/expected/52.out	file
samtools/samtools-1.15.1/test/mpileup/expected/53.out	file
samtools/samtools-1.15.1/test/mpileup/expected/54.out	file
samtools/samtools-1.15.1/test/mpileup/expected/55.out	file
samtools/samtools-1.15.1/test/mpileup/expected/56.out	file
samtools/samtools-1.15.1/test/mpileup/expected/57.out	file
samtools/samtools-1.15.1/test/mpileup/expected/58.out	file
samtools/samtools-1.15.1/test/mpileup/expected/59.out	file
samtools/samtools-1.15.1/test/mpileup/expected/6.out	file
samtools/samtools-1.15.1/test/mpileup/expected/60.out	file
samtools/samtools-1.15.1/test/mpileup/expected/61.out	file
samtools/samtools-1.15.1/test/mpileup/expected/62.out	file
samtools/samtools-1.15.1/test/mpileup/expected/63.out	file
samtools/samtools-1.15.1/test/mpileup/expected/64.out	file
samtools/samtools-1.15.1/test/mpileup/expected/65.out	file
samtools/samtools-1.15.1/test/mpileup/expected/66.out	file
samtools/samtools-1.15.1/test/mpileup/expected/67.out	file
samtools/samtools-1.15.1/test/mpileup/expected/68.out	file
samtools/samtools-1.15.1/test/mpileup/expected/69.out	file
samtools/samtools-1.15.1/test/mpileup/expected/7.out	file
samtools/samtools-1.15.1/test/mpileup/expected/70.out	file
samtools/samtools-1.15.1/test/mpileup/expected/71.out	file
samtools/samtools-1.15.1/test/mpileup/expected/72.out	file
samtools/samtools-1.15.1/test/mpileup/expected/73.out	file
samtools/samtools-1.15.1/test/mpileup/expected/74.out	file
samtools/samtools-1.15.1/test/mpileup/expected/75.out	file
samtools/samtools-1.15.1/test/mpileup/expected/76.out	file
samtools/samtools-1.15.1/test/mpileup/expected/77.out	file
samtools/samtools-1.15.1/test/mpileup/expected/78.out	file
samtools/samtools-1.15.1/test/mpileup/expected/79.out	file
samtools/samtools-1.15.1/test/mpileup/expected/8.out	file
samtools/samtools-1.15.1/test/mpileup/expected/80.out	file
samtools/samtools-1.15.1/test/mpileup/expected/81.out	file
samtools/samtools-1.15.1/test/mpileup/expected/9.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a0.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a1.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a10.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a11.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a13.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a14.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a15.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a16.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a17.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a2.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a3.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a4.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a5.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a6.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a8.out	file
samtools/samtools-1.15.1/test/mpileup/expected/a9.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d1_1.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d1_12.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d1_2.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d2_12r.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d3_12.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d3_12r1a.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d3_12r2a.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d3_3.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d4_12.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d4_12b.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d4_12r.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d5_all1.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d5_all2.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d5_all3.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d5_all4.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d5_b3.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d5_b3a.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d5_b3aa.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d5_blank.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d5_xx1.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d5_xx2.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d5_xx3.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d5_xy1.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d6_nodel.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d6_wdel.out	file
samtools/samtools-1.15.1/test/mpileup/expected/d7_nodup.out	file
samtools/samtools-1.15.1/test/mpileup/expected/m5_all1.out	file
samtools/samtools-1.15.1/test/mpileup/expected/m5_all2.out	file
samtools/samtools-1.15.1/test/mpileup/expected/m5_all3.out	file
samtools/samtools-1.15.1/test/mpileup/expected/m5_b3.out	file
samtools/samtools-1.15.1/test/mpileup/expected/m5_b3a.out	file
samtools/samtools-1.15.1/test/mpileup/expected/m5_b3aa.out	file
samtools/samtools-1.15.1/test/mpileup/expected/m5_blank.out	file
samtools/samtools-1.15.1/test/mpileup/expected/m5_xx1.out	file
samtools/samtools-1.15.1/test/mpileup/expected/m5_xx2.out	file
samtools/samtools-1.15.1/test/mpileup/expected/m5_xx3.out	file
samtools/samtools-1.15.1/test/mpileup/expected/m5_xy1.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp1_d.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp1_dd.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp1_ends.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp1_i.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp1_ii.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp1_iidd.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp2-noins.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp2.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp_D.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp_DI.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp_I.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp_ID.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp_ID_rev.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp_N.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp_N2.out	file
samtools/samtools-1.15.1/test/mpileup/expected/mp_P.out	file
samtools/samtools-1.15.1/test/mpileup/md5	directory
samtools/samtools-1.15.1/test/mpileup/md5/02099b2aad2cfe707759353724fb40ae	file
samtools/samtools-1.15.1/test/mpileup/md5/0d4dfc45807d6a11439e858605cb364d	file
samtools/samtools-1.15.1/test/mpileup/md5/351f64d4f4f9ddd45b35336ad97aa6de	file
samtools/samtools-1.15.1/test/mpileup/md5/6ec590eb82c361a61e6baabce20109bc	file
samtools/samtools-1.15.1/test/mpileup/md5/6f60cdf4c739651ae72d53e2e94825c1	file
samtools/samtools-1.15.1/test/mpileup/md5/73d180d5cb3860a2713927b6812eab0e	file
samtools/samtools-1.15.1/test/quickcheck	directory
samtools/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam	file
samtools/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam	file
samtools/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam	file
samtools/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam	file
samtools/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam	file
samtools/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram	file
samtools/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram	file
samtools/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram	file
samtools/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram	file
samtools/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram	file
samtools/samtools-1.15.1/test/quickcheck/all.expected	file
samtools/samtools-1.15.1/test/reheader	directory
samtools/samtools-1.15.1/test/reheader/1_view1.sam.expected	file
samtools/samtools-1.15.1/test/reheader/1_view1.sam.expected.err	file
samtools/samtools-1.15.1/test/reheader/2_view1.sam.expected	file
samtools/samtools-1.15.1/test/reheader/2_view1.sam.expected.err	file
samtools/samtools-1.15.1/test/reheader/3_view1.sam.expected	file
samtools/samtools-1.15.1/test/reheader/3_view1.sam.expected.err	file
samtools/samtools-1.15.1/test/reheader/4_view1.sam.expected	file
samtools/samtools-1.15.1/test/reheader/5_view1.sam.expected	file
samtools/samtools-1.15.1/test/reheader/hdr.sam	file
samtools/samtools-1.15.1/test/sort	directory
samtools/samtools-1.15.1/test/sort/name.sort.expected.sam	file
samtools/samtools-1.15.1/test/sort/pos.sort.expected.sam	file
samtools/samtools-1.15.1/test/sort/tag.as.sort.expected.sam	file
samtools/samtools-1.15.1/test/sort/tag.fi.sort.expected.sam	file
samtools/samtools-1.15.1/test/sort/tag.rg.n.sort.expected.sam	file
samtools/samtools-1.15.1/test/sort/tag.rg.sort.expected.sam	file
samtools/samtools-1.15.1/test/split	directory
samtools/samtools-1.15.1/test/split/split.expected.grp1.sam	file
samtools/samtools-1.15.1/test/split/split.expected.grp2.sam	file
samtools/samtools-1.15.1/test/split/split.expected.unk.sam	file
samtools/samtools-1.15.1/test/split/split.sam	file
samtools/samtools-1.15.1/test/split/test_count_rg.c	file
samtools/samtools-1.15.1/test/split/test_expand_format_string.c	file
samtools/samtools-1.15.1/test/split/test_filter_header_rg.c	file
samtools/samtools-1.15.1/test/split/test_parse_args.c	file
samtools/samtools-1.15.1/test/stat	directory
samtools/samtools-1.15.1/test/stat/1.stats.expected	file
samtools/samtools-1.15.1/test/stat/1.stats.large.expected	file
samtools/samtools-1.15.1/test/stat/10.stats.expected	file
samtools/samtools-1.15.1/test/stat/10_map_cigar.sam	file
samtools/samtools-1.15.1/test/stat/10_map_cigar.sam_s1_a_1.expected.bamstat	file
samtools/samtools-1.15.1/test/stat/10_map_cigar.sam_s1_b_1.expected.bamstat	file
samtools/samtools-1.15.1/test/stat/11.stats.expected	file
samtools/samtools-1.15.1/test/stat/11.stats.g4.expected	file
samtools/samtools-1.15.1/test/stat/11.stats.targets	file
samtools/samtools-1.15.1/test/stat/11_target.bam	file
samtools/samtools-1.15.1/test/stat/11_target.bam.bai	file
samtools/samtools-1.15.1/test/stat/11_target.sam	file
samtools/samtools-1.15.1/test/stat/12.2reads.nooverlap.expected	file
samtools/samtools-1.15.1/test/stat/12.2reads.overlap.expected	file
samtools/samtools-1.15.1/test/stat/12.3reads.nooverlap.expected	file
samtools/samtools-1.15.1/test/stat/12.3reads.overlap.expected	file
samtools/samtools-1.15.1/test/stat/12_2reads.bed	file
samtools/samtools-1.15.1/test/stat/12_3reads.bed	file
samtools/samtools-1.15.1/test/stat/12_overlaps.bam	file
samtools/samtools-1.15.1/test/stat/13.barcodes.bc.ok.expected	file
samtools/samtools-1.15.1/test/stat/13.barcodes.ox.ok.expected	file
samtools/samtools-1.15.1/test/stat/13_barcodes_fail_bc_length.sam	file
samtools/samtools-1.15.1/test/stat/13_barcodes_fail_hyphen.sam	file
samtools/samtools-1.15.1/test/stat/13_barcodes_fail_qt_length.sam	file
samtools/samtools-1.15.1/test/stat/13_barcodes_ok.sam	file
samtools/samtools-1.15.1/test/stat/13_barcodes_ok_ox_bz.sam	file
samtools/samtools-1.15.1/test/stat/14.rg.grp2.expected	file
samtools/samtools-1.15.1/test/stat/14.rg.grp3.expected	file
samtools/samtools-1.15.1/test/stat/14.rg.s1.expected	file
samtools/samtools-1.15.1/test/stat/14.rg.Sample.expected	file
samtools/samtools-1.15.1/test/stat/1_map_cigar.sam	file
samtools/samtools-1.15.1/test/stat/1_map_cigar.sam_s1_a_1.expected.bamstat	file
samtools/samtools-1.15.1/test/stat/1_map_cigar_large.sam	file
samtools/samtools-1.15.1/test/stat/2.stats.expected	file
samtools/samtools-1.15.1/test/stat/2.stats.large.expected	file
samtools/samtools-1.15.1/test/stat/2_equal_cigar_full_seq.sam	file
samtools/samtools-1.15.1/test/stat/2_equal_cigar_full_seq_large.sam	file
samtools/samtools-1.15.1/test/stat/3.stats.expected	file
samtools/samtools-1.15.1/test/stat/3.stats.large.expected	file
samtools/samtools-1.15.1/test/stat/3_map_cigar_equal_seq.sam	file
samtools/samtools-1.15.1/test/stat/3_map_cigar_equal_seq_large.sam	file
samtools/samtools-1.15.1/test/stat/4.stats.expected	file
samtools/samtools-1.15.1/test/stat/4.stats.large.expected	file
samtools/samtools-1.15.1/test/stat/4_X_cigar_full_seq.sam	file
samtools/samtools-1.15.1/test/stat/4_X_cigar_full_seq_large.sam	file
samtools/samtools-1.15.1/test/stat/5.stats.expected	file
samtools/samtools-1.15.1/test/stat/5.stats.large.expected	file
samtools/samtools-1.15.1/test/stat/5_insert_cigar.sam	file
samtools/samtools-1.15.1/test/stat/5_insert_cigar_large.sam	file
samtools/samtools-1.15.1/test/stat/6.stats.expected	file
samtools/samtools-1.15.1/test/stat/7.stats.expected	file
samtools/samtools-1.15.1/test/stat/7.stats.large.expected	file
samtools/samtools-1.15.1/test/stat/7_supp.sam	file
samtools/samtools-1.15.1/test/stat/7_supp_large.sam	file
samtools/samtools-1.15.1/test/stat/8.stats.expected	file
samtools/samtools-1.15.1/test/stat/8.stats.large.expected	file
samtools/samtools-1.15.1/test/stat/8_secondary.sam	file
samtools/samtools-1.15.1/test/stat/8_secondary_large.sam	file
samtools/samtools-1.15.1/test/stat/9.stats.expected	file
samtools/samtools-1.15.1/test/stat/test.fa	file
samtools/samtools-1.15.1/test/stat/test.fa.fai	file
samtools/samtools-1.15.1/test/tview	directory
samtools/samtools-1.15.1/test/tview/test_get_rg_sample.c	file

Holders

path	holder	start	end

Authors

path	Author	start	end

Emails

path	email	start	end

Urls

path	url	start	end

License References

key	short_name	category	owner	scancode_url	licensedb_url	homepage_url	text_urls	spdx_license_key	spdx_url
autoconf-macro-exception	Autoconf macro exception	Copyleft Limited	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/autoconf-macro-exception.LICENSE	https://scancode-licensedb.aboutcode.org/autoconf-macro-exception	https://www.gnu.org/software/autoconf-archive/		Autoconf-exception-macro	https://spdx.org/licenses/Autoconf-exception-macro
autoconf-simple-exception-2.0	Autoconf simple exception to GPL-2.0	Copyleft Limited	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/autoconf-simple-exception-2.0.LICENSE	https://scancode-licensedb.aboutcode.org/autoconf-simple-exception-2.0	https://git.savannah.gnu.org/gitweb/?p=config.git;a=blob;f=config.guess;h=a7448442748cc6f98a066d2d1051fad3b043761a;hb=HEAD		Autoconf-exception-generic	https://spdx.org/licenses/Autoconf-exception-generic
bsd-new	BSD-3-Clause	Permissive	Regents of the University of California	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/bsd-new.LICENSE	https://scancode-licensedb.aboutcode.org/bsd-new	http://www.opensource.org/licenses/BSD-3-Clause	http://www.opensource.org/licenses/BSD-3-Clause	BSD-3-Clause	https://spdx.org/licenses/BSD-3-Clause
bsd-simplified	BSD-2-Clause	Permissive	Regents of the University of California	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/bsd-simplified.LICENSE	https://scancode-licensedb.aboutcode.org/bsd-simplified	http://www.opensource.org/licenses/BSD-2-Clause	http://opensource.org/licenses/bsd-license.php	BSD-2-Clause	https://spdx.org/licenses/BSD-2-Clause
cc0-1.0	CC0-1.0	Public Domain	Creative Commons	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/cc0-1.0.LICENSE	https://scancode-licensedb.aboutcode.org/cc0-1.0	http://creativecommons.org/publicdomain/zero/1.0/	http://creativecommons.org/publicdomain/zero/1.0/legalcode	CC0-1.0	https://spdx.org/licenses/CC0-1.0
fsf-ap	FSF All Permissive License	Permissive	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/fsf-ap.LICENSE	https://scancode-licensedb.aboutcode.org/fsf-ap	http://www.gnu.org/prep/maintain/html_node/License-Notices-for-Other-Files.html		FSFAP	https://spdx.org/licenses/FSFAP
fsf-free	FSF Free Software License	Public Domain	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/fsf-free.LICENSE	https://scancode-licensedb.aboutcode.org/fsf-free	http://www.fsf.org/licensing/licenses/	https://fedoraproject.org/wiki/Licensing/FSF_Unlimited_License	FSFUL	https://spdx.org/licenses/FSFUL
fsf-notice	FSF Notice	Permissive	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/fsf-notice.LICENSE	https://scancode-licensedb.aboutcode.org/fsf-notice	http://www.fsf.org/licensing/licenses/		LicenseRef-scancode-fsf-notice	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/fsf-notice.LICENSE
gpl-2.0-plus	GPL 2.0 or later	Copyleft	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/gpl-2.0-plus.LICENSE	https://scancode-licensedb.aboutcode.org/gpl-2.0-plus	http://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html	http://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html	GPL-2.0-or-later	https://spdx.org/licenses/GPL-2.0-or-later
gpl-3.0-plus	GPL 3.0 or later	Copyleft	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/gpl-3.0-plus.LICENSE	https://scancode-licensedb.aboutcode.org/gpl-3.0-plus	http://www.gnu.org/licenses/gpl-3.0-standalone.html	http://www.gnu.org/licenses/gpl-3.0-standalone.html	GPL-3.0-or-later	https://spdx.org/licenses/GPL-3.0-or-later
linux-man-pages-1-para	Linux man-pages - 1 paragraph	Copyleft Limited	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/linux-man-pages-1-para.LICENSE	https://scancode-licensedb.aboutcode.org/linux-man-pages-1-para	None		Linux-man-pages-1-para	https://spdx.org/licenses/Linux-man-pages-1-para
martin-birgmeier	Martin Bergmeier License	Permissive	Martin Bergmeier	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/martin-birgmeier.LICENSE	https://scancode-licensedb.aboutcode.org/martin-birgmeier	https://chromium.googlesource.com/native_client/nacl-newlib/+/590b76526a1ff92504bf20234610043fd45ae034/newlib/libc/stdlib/rand48.h	https://chromium.googlesource.com/native_client/nacl-newlib/+/590b76526a1ff92504bf20234610043fd45ae034/newlib/libc/stdlib/rand48.h	Martin-Birgmeier	https://spdx.org/licenses/Martin-Birgmeier
mit	MIT License	Permissive	MIT	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/mit.LICENSE	https://scancode-licensedb.aboutcode.org/mit	http://opensource.org/licenses/mit-license.php	http://opensource.org/licenses/mit-license.php	MIT	https://spdx.org/licenses/MIT
other-permissive	Other Permissive Licenses	Permissive	nexB	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/other-permissive.LICENSE	https://scancode-licensedb.aboutcode.org/other-permissive	None		LicenseRef-scancode-other-permissive	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/other-permissive.LICENSE
proprietary-license	Proprietary License	Commercial	Unspecified	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/proprietary-license.LICENSE	https://scancode-licensedb.aboutcode.org/proprietary-license	None		LicenseRef-scancode-proprietary-license	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/proprietary-license.LICENSE
public-domain	Public Domain	Public Domain	Unspecified	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/public-domain.LICENSE	https://scancode-licensedb.aboutcode.org/public-domain	http://www.linfo.org/publicdomain.html		LicenseRef-scancode-public-domain	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/public-domain.LICENSE
unknown-license-reference	Unknown License reference	Unstated License	Unspecified	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/unknown-license-reference.LICENSE	https://scancode-licensedb.aboutcode.org/unknown-license-reference	None		LicenseRef-scancode-unknown-license-reference	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/unknown-license-reference.LICENSE
x11-xconsortium	X11-Style (X Consortium)	Permissive	X Consortium	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/x11-xconsortium.LICENSE	https://scancode-licensedb.aboutcode.org/x11-xconsortium	http://www.xfree86.org/current/LICENSE5.html	http://www.xfree86.org/current/LICENSE5.html	X11	https://spdx.org/licenses/X11