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seqan2/seqan-seqan-v2.4.0-SPECPARTS |
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seqan2/sources |
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seqan2/seqan-seqan-v2.4.0 |
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seqan2/seqan-seqan-v2.4.0/CHANGELOG.rst |
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seqan2/seqan-seqan-v2.4.0/CMakeLists.txt |
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seqan2/seqan-seqan-v2.4.0/CONTRIBUTING.rst |
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seqan2/seqan-seqan-v2.4.0/LICENSE |
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seqan2/seqan-seqan-v2.4.0/README.rst |
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seqan2/seqan-seqan-v2.4.0/apps |
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seqan2/seqan-seqan-v2.4.0/apps/CMakeLists.txt |
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seqan2/seqan-seqan-v2.4.0/apps/alf |
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seqan2/seqan-seqan-v2.4.0/apps/alf/alf-LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/alf/LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/alf/example |
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seqan2/seqan-seqan-v2.4.0/apps/alf/example/small.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/bisar.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/bisar_score.h |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/bs_tools-LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/casbar.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/casbar_util.h |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/CMakeLists.txt |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/four2three.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/README |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/README.bisar |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/README.casbar |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/tests |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/tests/bisar_out_pe_0.txt |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/tests/bisar_out_se_0.txt |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/tests/casbar_out_pe_0.stdout |
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seqan2/seqan-seqan-v2.4.0/apps/bs_tools/tests/casbar_out_se_0.stdout |
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seqan2/seqan-seqan-v2.4.0/apps/insegt/create_gff.h |
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seqan2/seqan-seqan-v2.4.0/apps/insegt/insegt-LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/insegt/insegt.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/insegt/LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/insegt/overlap_module.h |
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seqan2/seqan-seqan-v2.4.0/apps/insegt/README |
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seqan2/seqan-seqan-v2.4.0/apps/insegt/example |
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seqan2/seqan-seqan-v2.4.0/apps/insegt/example/alignments.sam |
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seqan2/seqan-seqan-v2.4.0/apps/insegt/tests |
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seqan2/seqan-seqan-v2.4.0/apps/mason2 |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/breakpoint_contigs.awk |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/CMakeLists.txt |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/external_split_merge.h |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/fragment_generation.h |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/genomic_variants.h |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/individual_genome.h |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/mason2-LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/mason_frag_sequencing.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/mason_genome.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/mason_materializer.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/mason_methylation.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/mason_options.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/mason_options.h |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/mason_simulator.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/mason_splicing.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/mason_tests.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/mason_types.h |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/mason_variator.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/methylation_levels.h |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/omp_wrapper.h |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/README |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/README.mason_frag_sequencing |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/README.mason_genome |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/README.mason_materializer |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/README.mason_methylation |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/README.mason_simulator |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/README.mason_splicing |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/README.mason_variator |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/sequencing.h |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/simulate_454.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/simulate_base.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/simulate_genome.h |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/simulate_illumina.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/simulate_sanger.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/TODO |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/variation_size_tsv.h |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/vcf_materialization.h |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/example |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/example/adeno_fragments.fa |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/example/adeno_virus.fa |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/example/adeno_virus.fa.fai |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/example/adeno_virus.vcf |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/example/adeno_virus_b.fa |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/example/adeno_virus_b.fa.fai |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/example/adeno_virus_b.gff |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/example/example.tsv |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/adeno_virus.fa |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/adeno_virus.fa.fai |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/generate_outputs.sh |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/genome.test1.fa |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/genome.test1.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/genome.test1.stderr |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/genome.test1.stdout |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/genome.test2.fa |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/genome.test2.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/genome.test2.stderr |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/mason_genome.test1.stderr |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/materializer.random_var1.stderr |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/materializer.random_var1.stdout |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/materializer.random_var2.stderr |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/methylation.test1.stdout |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/methylation.test2.stderr |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/random.fa |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/random.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/random.fasta.fai |
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seqan2/seqan-seqan-v2.4.0/apps/mason2/tests/random_var1.vcf |
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seqan2/seqan-seqan-v2.4.0/apps/micro_razers |
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seqan2/seqan-seqan-v2.4.0/apps/micro_razers/CMakeLists.txt |
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seqan2/seqan-seqan-v2.4.0/apps/micro_razers/LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers-LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/micro_razers/micro_razers.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/micro_razers/README |
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seqan2/seqan-seqan-v2.4.0/apps/micro_razers/example |
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seqan2/seqan-seqan-v2.4.0/apps/micro_razers/example/genome.fa |
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seqan2/seqan-seqan-v2.4.0/apps/micro_razers/gapped_params |
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seqan2/seqan-seqan-v2.4.0/apps/sam2matrix/LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/samcat |
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seqan2/seqan-seqan-v2.4.0/apps/searchjoin/LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/example/seq.fa |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.bavg.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.bavg.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.bmax.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.bmax.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.bmin.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.bmin.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.bnj.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.bnj.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.bwavg.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.bwavg.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.e-5.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.e-5.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.fa |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.g-20.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.g-20.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.i.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.i.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.maVTML200.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.maVTML200.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mglobal.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mglobal.mlcs.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mglobal.mlcs.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mglobal.mlocal.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mglobal.mlocal.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mglobal.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mlcs.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mlcs.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mlocal.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mlocal.moverlap.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mlocal.moverlap.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mlocal.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mm-8.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.mm-8.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.moverlap.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.moverlap.mlcs.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.moverlap.mlcs.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.moverlap.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.ms10.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.ms10.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.newick |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.protein.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.protein.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.u.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1aab.u.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.bavg.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.bavg.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.bmax.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.bmax.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.bmin.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.bmin.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.bnj.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.bnj.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.bwavg.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.bwavg.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.e-5.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.e-5.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.fa |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.g-20.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.g-20.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.i.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.i.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.maVTML200.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.maVTML200.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.mglobal.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.mglobal.mlcs.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.mglobal.mlcs.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.mglobal.mlocal.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.mglobal.mlocal.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.mlcs.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.mlocal.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.mlocal.moverlap.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.mlocal.moverlap.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.mm-8.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.mm-8.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.moverlap.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.moverlap.mlcs.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.ms10.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.ms10.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.newick |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/1ad2.out |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/generate_outputs.sh |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/run_tests.py |
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seqan2/seqan-seqan-v2.4.0/apps/seqan_tcoffee/tests/VTML200I |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2 |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/CMakeLists.txt |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/README |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/seqcons.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/seqcons2-LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_app.h |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_options.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/seqcons_options.h |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/tests |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/tests/alns1.contig_consensus.fa |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/tests/alns1.contig_consensus.sam |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/tests/alns1.contig_consensus.sam.stderr |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/tests/alns1.contig_consensus.txt |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/tests/alns1.contig_consensus.txt.stderr |
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seqan2/seqan-seqan-v2.4.0/apps/seqcons2/tests/alns1.contig_consensus.txt.stdout |
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seqan2/seqan-seqan-v2.4.0/apps/sgip |
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seqan2/seqan-seqan-v2.4.0/apps/sgip/CMakeLists.txt |
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seqan2/seqan-seqan-v2.4.0/apps/sgip/LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/sgip/README |
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seqan2/seqan-seqan-v2.4.0/apps/sgip/sgip-LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/sgip/example/Iso_Data |
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seqan2/seqan-seqan-v2.4.0/apps/stellar/example |
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seqan2/seqan-seqan-v2.4.0/apps/stellar/example/NC_001474.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/stellar/example/reads.fasta |
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seqan2/seqan-seqan-v2.4.0/apps/stellar/tests |
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seqan2/seqan-seqan-v2.4.0/apps/tree_recon |
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seqan2/seqan-seqan-v2.4.0/apps/tree_recon/CMakeLists.txt |
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seqan2/seqan-seqan-v2.4.0/apps/tree_recon/example.dist |
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seqan2/seqan-seqan-v2.4.0/apps/tree_recon/LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/tree_recon/README |
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seqan2/seqan-seqan-v2.4.0/apps/tree_recon/tree_recon-LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/tree_recon/tree_recon.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/yara |
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seqan2/seqan-seqan-v2.4.0/apps/yara/basic_alphabet.h |
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seqan2/seqan-seqan-v2.4.0/apps/yara/bits_seeds.h |
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seqan2/seqan-seqan-v2.4.0/apps/yara/CMakeLists.txt |
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seqan2/seqan-seqan-v2.4.0/apps/yara/file_pair.h |
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seqan2/seqan-seqan-v2.4.0/apps/yara/find_extender.h |
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seqan2/seqan-seqan-v2.4.0/apps/yara/find_verifier.h |
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seqan2/seqan-seqan-v2.4.0/apps/yara/index_fm.h |
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seqan2/seqan-seqan-v2.4.0/apps/yara/indexer.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/yara/LICENSE |
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seqan2/seqan-seqan-v2.4.0/apps/yara/mapper.cpp |
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seqan2/seqan-seqan-v2.4.0/apps/yara/mapper_aligner.h |
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seqan2/seqan-seqan-v2.4.0/apps/yara/mapper_classifier.h |
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seqan2/seqan-seqan-v2.4.0/apps/yara/mapper_collector.h |
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seqan2/seqan-seqan-v2.4.0/apps/yara/mapper_filter.h |
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seqan2/seqan-seqan-v2.4.0/apps/yara/mapper_ranker.h |
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seqan2/seqan-seqan-v2.4.0/demos/dox/graph_align |
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seqan2/seqan-seqan-v2.4.0/demos/dox/graph_align/graph_align.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/dox/graph_types |
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seqan2/seqan-seqan-v2.4.0/demos/dox/graph_types/graph_algo_dijkstra.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/dox/index/begin_atEnd_representative.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/dox/index/begin_atEnd_representative_bottomUp.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/dox/index/begin_range_goDown_representative_repLength.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/dox/index/counting.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/dox/index/finder.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/dox/index/length_countSequences.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/dox/index/node_predicate.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/dox/index/shape_hash_init.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/dox/index/supermaxrepeats.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/dox/index/textAt_indexText_saAt_indexRequire.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/tutorial/alphabets |
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seqan2/seqan-seqan-v2.4.0/demos/tutorial/alphabets/assignment_1.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/tutorial/bed_io |
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seqan2/seqan-seqan-v2.4.0/demos/tutorial/blast_io |
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seqan2/seqan-seqan-v2.4.0/demos/tutorial/consensus_alignment |
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seqan2/seqan-seqan-v2.4.0/demos/tutorial/genome_annotations/assignment_1_hint.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/tutorial/workflows |
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seqan2/seqan-seqan-v2.4.0/demos/unassigned_or_unused/alphabet.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/unassigned_or_unused/annotation_converter.cpp |
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seqan2/seqan-seqan-v2.4.0/demos/unassigned_or_unused/arg_align.README |
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seqan2/seqan-seqan-v2.4.0/include/seqan/version.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/alignment_operations.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_band.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_cell.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_cell_affine.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_cell_dynamic.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_cell_linear.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_context.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_formula.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_formula_affine.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_formula_dynamic.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_matrix.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_matrix_navigator.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_matrix_navigator_score_matrix.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_matrix_navigator_trace_matrix.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_meta_info.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_profile.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_scout.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_setup.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_trace_segment.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/dp_traceback_adaptor.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align/evaluate_alignment.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/dp_settings.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/dp_traits.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/parallel_align_interface.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/wavefront_alignment_executor.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/wavefront_alignment_result.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/wavefront_alignment_scheduler.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/wavefront_alignment_task.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/wavefront_alignment_thread_local_storage.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/wavefront_task.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/wavefront_task_event.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/wavefront_task_executor.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/wavefront_task_queue.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_parallel/wavefront_task_scheduler.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_profile |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_profile/add_to_profile.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_profile/score_profile_seq.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_split |
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seqan2/seqan-seqan-v2.4.0/include/seqan/align_split/align_split_interface.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/alignment_free |
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seqan2/seqan-seqan-v2.4.0/include/seqan/alignment_free/kmer_functions.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/arg_parse |
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seqan2/seqan-seqan-v2.4.0/include/seqan/arg_parse/arg_parse_version_check.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/arg_parse/argument_parser.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/arg_parse/tool_doc.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/arg_parse/xml_support.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/bam_io |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/aggregate_concept.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/allocator_chunkpool.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/allocator_interface.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/allocator_multipool.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/allocator_simple.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/allocator_singlepool.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/allocator_to_std.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/alphabet_adapt_builtins.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/alphabet_bio.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/alphabet_concept.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/alphabet_math.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/alphabet_profile.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/alphabet_qualities.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/alphabet_residue_tabs.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/alphabet_simple_type.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/alphabet_storage.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/array_construct_destruct.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_aggregate.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_allocator.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_alphabet.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_container.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_debug.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_device.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_exception.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_functors.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_fundamental.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_iterator.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_math.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_metaprogramming.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_parallelism.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_proxy.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_smart_pointer.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_stream.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_tangle.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_type.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/basic_view.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/boost_preprocessor_subset.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/builtin_functions.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/concept_checking.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/container_concept.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/debug_helper.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_chunking.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_comparison.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_concepts.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_conversion.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_metafunctions.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_tags.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/fundamental_transport.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/holder_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/holder_simple.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/holder_tristate.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/hosted_type_interface.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adapt_pointer.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adapt_std.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/iterator_adaptor.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/iterator_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/iterator_concept.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/iterator_counting.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/iterator_interface.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/iterator_position.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/iterator_range.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/iterator_zip.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/macro_deprecated.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/math_functions.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/math_log_space_value.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/metaprogramming_control.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/metaprogramming_enable_if.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/metaprogramming_logic.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/metaprogramming_math.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/metaprogramming_type.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/metaprogramming_type_algebra.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/pair_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/pair_bit_compressed.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/pair_packed.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/profiling.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/property_map_concept.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/proxy_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/proxy_iterator.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/test_system.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/triple_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/triple_packed.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/tuple_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/tuple_bit_compressed.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/basic/volatile_ptr.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/bed_io |
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seqan2/seqan-seqan-v2.4.0/include/seqan/bed_io/bed_file.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/bed_io/bed_record.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/bed_io/read_bed.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/bed_io/write_bed.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/blast |
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seqan2/seqan-seqan-v2.4.0/include/seqan/blast/blast_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/blast/blast_io_context.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/blast/blast_record.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/blast/blast_report_out.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/blast/blast_statistics.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/blast/blast_tabular.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/blast/blast_tabular_in.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/blast/blast_tabular_lowlevel.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/blast/blast_tabular_out.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/consensus |
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seqan2/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_aligner_interface.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_alignment_options.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_builder.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_library.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_realign.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/consensus/consensus_score.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/consensus/overlap_info_computation.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/consensus/overlapper.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/file |
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seqan2/seqan-seqan-v2.4.0/include/seqan/file/file_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/file/file_cstyle.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/file/file_forwards.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/file/file_interface.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/file/file_mapping.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/file/file_page.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/file/string_external.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/file/string_mmap.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_abndm.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_ahocorasick.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_begin.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_bndm.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_bom.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_hamming_simple.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_horspool.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_lambda.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_multi.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_multiple_bfam.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_multiple_shiftand.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/find/find_myers_ukkonen.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/find_index_lambda.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/find_index_qgram.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/find_pigeonhole.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/find_quasar.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/find_swift.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_bidirectional.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_bidirectional_stree.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_bifm.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_bifm_stree.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_bwt.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_childtab.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_device.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_dfi.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_esa_algs.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_esa_algs_multi.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_esa_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_esa_drawing.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_esa_stree.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm_compressed_sa.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm_compressed_sa_iterator.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm_dox.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm_lf_table.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm_rank_dictionary_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm_rank_dictionary_levels.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm_rank_dictionary_naive.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm_rank_dictionary_wt.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm_right_array_binary_tree.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm_right_array_binary_tree_iterator.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm_sparse_string.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_fm_stree.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_forwards.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_lcp.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_lcp_tree.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_pizzachili.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_pizzachili_find.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_pizzachili_string.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_qgram.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_bucketrefinement.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_openaddressing.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_qgram_stree.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_sa_btree.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_sa_bwtwalk.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_sa_lss.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_sa_mm.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_sa_qsort.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_sa_stree.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_sa_truncated.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_shawarma.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_shims.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_skew3.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_skew7.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_skew7_multi.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_view.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/index_wotd.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger3.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/pipe_merger7.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/pizzachili_api.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/pump_extender3.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/pump_extender7.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/pump_lcp_core.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/pump_separator7.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/radix.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/repeat_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/shape_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/shape_gapped.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/shape_minimizer.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/shape_onegapped.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/shape_predefined.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/index/shape_threshold.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_set |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_set/journal_alignment_interface.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_set/journal_alignment_traceback_adaptor.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_set/journaled_set_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_set/journaled_set_impl.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_set/journaled_set_join.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_set/journaled_set_join_config.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_set/journaled_set_join_global_align_compact.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_set/journaled_set_join_global_align_manhatten.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_set/journaled_set_journal_trace_descriptor.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_set/score_biaffine.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_string_tree |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_string_tree/delta_map.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_string_tree/delta_map_entry.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_string_tree/delta_map_iterator.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_string_tree/delta_store.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_string_tree/journaled_string_tree_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_string_tree/journaled_string_tree_impl.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/modifier/cyclic_shape.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/reduced_aminoacid |
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seqan2/seqan-seqan-v2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_li10_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/rna_io |
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seqan2/seqan-seqan-v2.4.0/include/seqan/rna_io/bpseq_read_write.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/rna_io/rna_struct_file.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/rna_io/stockholm_read_write.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/roi_io |
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seqan2/seqan-seqan-v2.4.0/include/seqan/roi_io/read_roi.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/roi_io/roi_record.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/roi_io/write_roi.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/score |
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seqan2/seqan-seqan-v2.4.0/include/seqan/score/score_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/score/score_simple.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/seeds |
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seqan2/seqan-seqan-v2.4.0/include/seqan/seeds/banded_chain_alignment.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/seq_io |
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seqan2/seqan-seqan-v2.4.0/include/seqan/seq_io/sequence_file.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence/adapt_array_pointer.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence/string_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence/string_block.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence/string_cstyle.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence/string_packed.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_concat_direct.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_dependent_generous.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_dependent_tight.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_owner.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_segment.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence/string_set_view.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence_journaled |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence_journaled/journal_entry.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence_journaled/sequence_journaled_iterator.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/sequence_journaled/sequence_journaled_iterator_fast.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/simd |
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seqan2/seqan-seqan-v2.4.0/include/seqan/simd/simd_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/simd/simd_base_seqan_impl_avx2.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/simd/simd_base_seqan_impl_avx512.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/simd/simd_base_seqan_interface.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/simd/simd_base_umesimd_impl.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/simple_intervals_io |
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seqan2/seqan-seqan-v2.4.0/include/seqan/simple_intervals_io/simple_intervals_file.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/simple_intervals_io/simple_intervals_io.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/statistics |
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seqan2/seqan-seqan-v2.4.0/include/seqan/statistics/statistics_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/statistics/statistics_markov_model.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_align.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_align_intervals.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_all.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_annotation.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_contig.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_intervaltree.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_io.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_io_gff.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_io_sam.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_io_ucsc.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_library.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_matepair.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/store/store_read.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/adapt_ios.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/buffered_stream.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/file_stream.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/formatted_file.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/guess_format.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/iostream_bgzf.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/iostream_bzip2.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/iostream_bzip2_impl.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/iostream_zip.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/iostream_zip_impl.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/iostream_zutil.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/iter_stream.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/lexical_cast.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/stream_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/stream_compressor.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/tokenization.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/stream/virtual_stream.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/system |
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seqan2/seqan-seqan-v2.4.0/include/seqan/system/file_async.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/system/file_directory.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/system/file_forwards.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/system/file_sync.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/system/system_base.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/system/system_event_win.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/tabix_io |
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seqan2/seqan-seqan-v2.4.0/include/seqan/tabix_io/tabix_index_tbi.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/translation |
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seqan2/seqan-seqan-v2.4.0/include/seqan/translation/translation.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/translation/translation_tables.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/ucsc_io |
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seqan2/seqan-seqan-v2.4.0/include/seqan/ucsc_io/ucsc_file.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/ucsc_io/ucsc_io.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/ucsc_io/ucsc_record.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/vcf_io |
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seqan2/seqan-seqan-v2.4.0/include/seqan/vcf_io/read_vcf.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/vcf_io/vcf_file.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/vcf_io/vcf_header.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/vcf_io/vcf_io_context.h |
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seqan2/seqan-seqan-v2.4.0/include/seqan/vcf_io/write_vcf.h |
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seqan2/seqan-seqan-v2.4.0/manual |
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seqan2/seqan-seqan-v2.4.0/manual/CMakeLists.txt |
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seqan2/seqan-seqan-v2.4.0/manual/make.bat |
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seqan2/seqan-seqan-v2.4.0/manual/Makefile |
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seqan2/seqan-seqan-v2.4.0/manual/README |
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seqan2/seqan-seqan-v2.4.0/manual/requirements.txt |
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seqan2/seqan-seqan-v2.4.0/util/valgrind/zlib.supp |
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