Copyrights and Licenses Information

path	start	end	what	value
wise2/wise2.spec	8	8	license	bsd-new
wise2/wise2.spec	9	9	license	gpl-2.0-plus
wise2/wise2.spec	10	10	license	unknown-license-reference
wise2/wise2.spec	11	11	license	bsd-new
wise2/wise2.spec	11	11	license	gpl-2.0-plus
wise2/wise2.spec	73	73	license	gpl-1.0-plus
wise2/wise2.spec	113	113	license	gpl-1.0-plus
wise2/wise2.4.1/LICENSE	12	13	license	bsd-new
wise2/wise2.4.1/LICENSE	22	22	license	unknown-license-reference
wise2/wise2.4.1/LICENSE	22	22	license	gpl-1.0-plus
wise2/wise2.4.1/LICENSE	24	24	license	gpl-1.0-plus
wise2/wise2.4.1/LICENSE	24	25	license	gpl-1.0-plus
wise2/wise2.4.1/LICENSE	27	27	license	bsd-new
wise2/wise2.4.1/LICENSE	29	29	license	gpl-1.0-plus
wise2/wise2.4.1/LICENSE	37	37	license	gpl-1.0-plus
wise2/wise2.4.1/LICENSE.base	4	4	license	bsd-new
wise2/wise2.4.1/LICENSE.base	10	20	license	bsd-simplified
wise2/wise2.4.1/LICENSE.base	22	40	license	bsd-new
wise2/wise2.4.1/LICENSE.dyc	4	4	license	bsd-new
wise2/wise2.4.1/LICENSE.dyc	10	20	license	bsd-simplified
wise2/wise2.4.1/LICENSE.dyc	22	40	license	bsd-new
wise2/wise2.4.1/LICENSE.dynlibsrc	4	4	license	bsd-new
wise2/wise2.4.1/LICENSE.dynlibsrc	11	21	license	bsd-simplified
wise2/wise2.4.1/LICENSE.dynlibsrc	23	41	license	bsd-new
wise2/wise2.4.1/LICENSE.GPL	1	339	license	gpl-2.0
wise2/wise2.4.1/docs/wise2.tex	140	140	license	gpl-1.0-plus
wise2/wise2.4.1/docs/wise2.tex	359	359	license	unknown-license-reference
wise2/wise2.4.1/docs/wise2.tex	360	360	license	gpl-1.0-plus
wise2/wise2.4.1/docs/wise3arch.tex	52	52	license	gpl-2.0 OR bsd-simplified
wise2/wise2.4.1/docs/wise3arch.tex	52	52	license	gpl-1.0-plus
wise2/wise2.4.1/docs/wise3arch.tex	59	59	license	gpl-1.0-plus
wise2/wise2.4.1/src/base/LICENSE	4	4	license	bsd-new
wise2/wise2.4.1/src/base/LICENSE	10	20	license	bsd-simplified
wise2/wise2.4.1/src/base/LICENSE	22	40	license	bsd-new
wise2/wise2.4.1/src/dnaindex/bigseqwise.c	13	13	license	gpl-2.0
wise2/wise2.4.1/src/dnaindex/bigseqwise.c	15	15	license	warranty-disclaimer
wise2/wise2.4.1/src/dnaindex/findbad_kmer.c	16	16	license	unknown-license-reference
wise2/wise2.4.1/src/dnaindex/findbad_kmer.c	16	16	license	gpl-1.0-plus
wise2/wise2.4.1/src/dnaindex/findbad_kmer.c	18	18	license	warranty-disclaimer
wise2/wise2.4.1/src/dnaindex/kwise.c	18	18	license	gpl-3.0
wise2/wise2.4.1/src/dnaindex/kwise.c	20	20	license	warranty-disclaimer
wise2/wise2.4.1/src/dnaindex/assembly/badkmer.c	28	28	license	gpl-2.0
wise2/wise2.4.1/src/dnaindex/assembly/badkmer.c	30	30	license	warranty-disclaimer
wise2/wise2.4.1/src/dnaindex/assembly/pathwise.c	43	43	license	unknown-license-reference
wise2/wise2.4.1/src/dnaindex/assembly/pathwise.c	43	43	license	gpl-1.0-plus
wise2/wise2.4.1/src/dnaindex/assembly/pathwise.c	45	45	license	warranty-disclaimer
wise2/wise2.4.1/src/dyc/LICENSE	4	4	license	bsd-new
wise2/wise2.4.1/src/dyc/LICENSE	10	20	license	bsd-simplified
wise2/wise2.4.1/src/dyc/LICENSE	22	40	license	bsd-new
wise2/wise2.4.1/src/dyc/y.tab.c	182	192	license	proprietary-license
wise2/wise2.4.1/src/dynamite_examples/est2gen.c	7	7	license	unknown-license-reference
wise2/wise2.4.1/src/dynamite_examples/est2gen.c	7	7	license	gpl-1.0-plus
wise2/wise2.4.1/src/dynlibsrc/LICENSE	4	4	license	bsd-new
wise2/wise2.4.1/src/dynlibsrc/LICENSE	11	21	license	bsd-simplified
wise2/wise2.4.1/src/dynlibsrc/LICENSE	23	41	license	bsd-new
wise2/wise2.4.1/src/HMMer2/aligneval.c	4	5	license	gpl-1.0-plus
wise2/wise2.4.1/src/HMMer2/alignio.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/alphabet.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/cluster.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/config.h	5	6	license	gpl-1.0-plus
wise2/wise2.4.1/src/HMMer2/core_algorithms.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/dayhoff.c	4	5	license	gpl-1.0-plus
wise2/wise2.4.1/src/HMMer2/emit.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/emulation.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/funcs.h	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/getopt.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/globals.h	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/GNULICENSE	1	339	license	gpl-2.0
wise2/wise2.4.1/src/HMMer2/gnuregex.c	16	28	license	gpl-2.0-plus
wise2/wise2.4.1/src/HMMer2/gnuregex.h	6	18	license	gpl-2.0-plus
wise2/wise2.4.1/src/HMMer2/histogram.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/hmmalign.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/hmmbuild.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/hmmcalibrate.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/hmmconvert.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/hmmemit.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/hmmio.c	5	6	license	gpl-1.0-plus
wise2/wise2.4.1/src/HMMer2/hmmpfam.c	5	6	license	gpl-1.0-plus
wise2/wise2.4.1/src/HMMer2/hmmsearch.c	5	6	license	gpl-1.0-plus
wise2/wise2.4.1/src/HMMer2/interleaved.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/iupac.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/Makefile	7	8	license	gpl-1.0-plus
wise2/wise2.4.1/src/HMMer2/masks.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/mathsupport.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/misc.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/misc.c	42	42	license	gpl-1.0-plus
wise2/wise2.4.1/src/HMMer2/misc.c	42	42	license	gpl-1.0-plus
wise2/wise2.4.1/src/HMMer2/msf.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/plan7.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/plan9.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/revcomp.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/selex.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/sqerror.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/sqfuncs.h	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/sqio.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/squid.h	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/sre_ctype.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/sre_math.c	4	5	license	gpl-1.0-plus
wise2/wise2.4.1/src/HMMer2/sre_math.c	34	34	license	public-domain
wise2/wise2.4.1/src/HMMer2/sre_math.c	240	240	license	public-domain
wise2/wise2.4.1/src/HMMer2/sre_string.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/sre_string.c	157	157	license	other-copyleft
wise2/wise2.4.1/src/HMMer2/stack.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/structs.h	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/tophits.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/trace.c	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/translate.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/types.c	4	5	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/version.h	5	6	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/version.h	25	26	license	agpl-3.0-plus
wise2/wise2.4.1/src/HMMer2/weight.c	4	5	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/alignwise.c	64	64	license	gpl-3.0-plus
wise2/wise2.4.1/src/models/alignwise.c	66	66	license	warranty-disclaimer
wise2/wise2.4.1/src/models/amplimer_resolver.c	13	13	license	unknown-license-reference
wise2/wise2.4.1/src/models/amplimer_resolver.c	13	13	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/amplimer_resolver.c	15	15	license	warranty-disclaimer
wise2/wise2.4.1/src/models/clonewise.c	28	28	license	unknown-license-reference
wise2/wise2.4.1/src/models/clonewise.c	28	28	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/clonewise.c	30	30	license	warranty-disclaimer
wise2/wise2.4.1/src/models/dbac.c	366	367	license	lgpl-2.0-plus
wise2/wise2.4.1/src/models/dnal.c	84	84	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/dnal.c	105	105	license	unknown-license-reference
wise2/wise2.4.1/src/models/dnal.c	105	105	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/dnal.c	107	107	license	warranty-disclaimer
wise2/wise2.4.1/src/models/dnawise.c	11	11	license	unknown-license-reference
wise2/wise2.4.1/src/models/dnawise.c	11	11	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/dnawise.c	13	13	license	warranty-disclaimer
wise2/wise2.4.1/src/models/editdist.c	11	11	license	unknown-license-reference
wise2/wise2.4.1/src/models/editdist.c	11	11	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/editdist.c	13	13	license	warranty-disclaimer
wise2/wise2.4.1/src/models/estwise.c	122	122	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/estwise.c	498	498	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/estwise.c	560	560	license	gpl-2.0
wise2/wise2.4.1/src/models/estwise.c	562	562	license	warranty-disclaimer
wise2/wise2.4.1/src/models/estwisedb.c	731	731	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/estwisedb.c	810	810	license	gpl-2.0
wise2/wise2.4.1/src/models/estwisedb.c	839	839	license	gpl-2.0
wise2/wise2.4.1/src/models/estwisedb.c	841	841	license	warranty-disclaimer
wise2/wise2.4.1/src/models/fivestar.c	17	17	license	unknown-license-reference
wise2/wise2.4.1/src/models/fivestar.c	17	17	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/fivestar.c	19	19	license	warranty-disclaimer
wise2/wise2.4.1/src/models/fivestarscan.c	17	17	license	unknown-license-reference
wise2/wise2.4.1/src/models/fivestarscan.c	17	17	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/fivestarscan.c	19	19	license	warranty-disclaimer
wise2/wise2.4.1/src/models/fivestarsearch.c	15	15	license	unknown-license-reference
wise2/wise2.4.1/src/models/fivestarsearch.c	15	15	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/fivestarsearch.c	17	17	license	warranty-disclaimer
wise2/wise2.4.1/src/models/genewise.c	175	175	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/genewise.c	777	777	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/genewisedb.c	508	508	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/genewisedb.c	910	910	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/genewisedb.c	1006	1006	license	gpl-2.0
wise2/wise2.4.1/src/models/genewisedb.c	1008	1008	license	warranty-disclaimer
wise2/wise2.4.1/src/models/genomewise.c	19	19	license	unknown-license-reference
wise2/wise2.4.1/src/models/genomewise.c	19	19	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/genomewise.c	21	21	license	warranty-disclaimer
wise2/wise2.4.1/src/models/GNULICENSE	1	339	license	gpl-2.0
wise2/wise2.4.1/src/models/oldpostwise.c	327	327	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/oldpostwise.c	378	378	license	gpl-3.0
wise2/wise2.4.1/src/models/oldpostwise.c	380	380	license	warranty-disclaimer
wise2/wise2.4.1/src/models/promotercluster.c	10	10	license	unknown-license-reference
wise2/wise2.4.1/src/models/promotercluster.c	10	10	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/promotercluster.c	12	12	license	warranty-disclaimer
wise2/wise2.4.1/src/models/pseudowise.c	16	16	license	unknown-license-reference
wise2/wise2.4.1/src/models/pseudowise.c	16	16	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/pseudowise.c	18	18	license	warranty-disclaimer
wise2/wise2.4.1/src/models/psw.c	262	262	license	unknown-license-reference
wise2/wise2.4.1/src/models/psw.c	262	262	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/psw.c	264	264	license	warranty-disclaimer
wise2/wise2.4.1/src/models/pswdb.c	98	98	license	gpl-3.0
wise2/wise2.4.1/src/models/pswdb.c	100	100	license	warranty-disclaimer
wise2/wise2.4.1/src/models/statwise.c	14	14	license	unknown-license-reference
wise2/wise2.4.1/src/models/statwise.c	14	14	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/statwise.c	16	16	license	warranty-disclaimer
wise2/wise2.4.1/src/models/sywise.c	15	15	license	unknown-license-reference
wise2/wise2.4.1/src/models/sywise.c	15	15	license	gpl-1.0-plus
wise2/wise2.4.1/src/models/sywise.c	17	17	license	warranty-disclaimer
wise2/wise2.4.1/src/test/basic_cdna.out	2	2	license	gpl-1.0-plus
wise2/wise2.4.1/src/test/basic_dna.out	2	2	license	gpl-1.0-plus
wise2/wise2.4.1/src/test/basic_genomic.out	2	2	license	gpl-1.0-plus
wise2/wise2.4.1/src/test/hmm_cdna.out	2	2	license	gpl-1.0-plus
wise2/wise2.4.1/src/test/hmm_genomic.out	2	2	license	gpl-1.0-plus

File Information

path	type	name	extension	date	size	sha1	md5	files_count	mime_type	file_type	programming_language	is_binary	is_text	is_archive	is_media	is_source	is_script
wise2	directory
wise2/sources	file
wise2/wise2-build.patch	file
wise2/wise2-c99.patch	file
wise2/wise2-getline.patch	file
wise2/wise2-glib2.patch	file
wise2/wise2-isnumber.patch	file
wise2/wise2-ld--as-needed.patch	file
wise2/wise2-mayhem.patch	file
wise2/wise2.4.1-SPECPARTS	directory
wise2/wise2.4.1.tar.gz	file
wise2/wise2.spec	file
wise2/wise2.4.1	directory
wise2/wise2.4.1/INSTALL	file
wise2/wise2.4.1/LICENSE	file
wise2/wise2.4.1/LICENSE.base	file
wise2/wise2.4.1/LICENSE.dyc	file
wise2/wise2.4.1/LICENSE.dynlibsrc	file
wise2/wise2.4.1/LICENSE.GPL	file
wise2/wise2.4.1/README	file
wise2/wise2.4.1/docs	directory
wise2/wise2.4.1/docs/apiend.tex	file
wise2/wise2.4.1/docs/appendix.tex	file
wise2/wise2.4.1/docs/dynamite.tex	file
wise2/wise2.4.1/docs/genewise21.eps	file
wise2/wise2.4.1/docs/genewise6.eps	file
wise2/wise2.4.1/docs/gettex.pl	file
wise2/wise2.4.1/docs/makefile	file
wise2/wise2.4.1/docs/README	file
wise2/wise2.4.1/docs/wise2.tex	file
wise2/wise2.4.1/docs/wise2api.tex	file
wise2/wise2.4.1/docs/wise3arch.tex	file
wise2/wise2.4.1/docs/papers	directory
wise2/wise2.4.1/docs/papers/alignment.bib	file
wise2/wise2.4.1/docs/papers/promoterwise.tex	file
wise2/wise2.4.1/src	directory
wise2/wise2.4.1/src/makefile	file
wise2/wise2.4.1/src/SOURCE_ROADMAP	file
wise2/wise2.4.1/src/welcome.csh	file
wise2/wise2.4.1/src/api	directory
wise2/wise2.4.1/src/api/README	file
wise2/wise2.4.1/src/api/examples	directory
wise2/wise2.4.1/src/api/examples/est.dna	file
wise2/wise2.4.1/src/api/examples/makefile	file
wise2/wise2.4.1/src/api/examples/README	file
wise2/wise2.4.1/src/api/examples/revcomp.c	file
wise2/wise2.4.1/src/api/examples/roac.pep	file
wise2/wise2.4.1/src/api/examples/road.pep	file
wise2/wise2.4.1/src/api/examples/sw.c	file
wise2/wise2.4.1/src/api/include	directory
wise2/wise2.4.1/src/api/include/basic.h	file
wise2/wise2.4.1/src/api/include/dyna.head	file
wise2/wise2.4.1/src/api/include/makefile	file
wise2/wise2.4.1/src/api/include/models.head	file
wise2/wise2.4.1/src/api/include/wisebase_api.h	file
wise2/wise2.4.1/src/api/libs	directory
wise2/wise2.4.1/src/api/libs/makefile	file
wise2/wise2.4.1/src/base	directory
wise2/wise2.4.1/src/base/commandline.c	file
wise2/wise2.4.1/src/base/commandline.dy	file
wise2/wise2.4.1/src/base/commandline.h	file
wise2/wise2.4.1/src/base/commandline_api.h	file
wise2/wise2.4.1/src/base/commandline_api.t	file
wise2/wise2.4.1/src/base/LICENSE	file
wise2/wise2.4.1/src/base/linesubs.c	file
wise2/wise2.4.1/src/base/linesubs.dy	file
wise2/wise2.4.1/src/base/linesubs.h	file
wise2/wise2.4.1/src/base/makefile	file
wise2/wise2.4.1/src/base/wisebase.h	file
wise2/wise2.4.1/src/base/wiseconfig.c	file
wise2/wise2.4.1/src/base/wiseconfig.h	file
wise2/wise2.4.1/src/base/wiseerror.c	file
wise2/wise2.4.1/src/base/wiseerror.dy	file
wise2/wise2.4.1/src/base/wiseerror.h	file
wise2/wise2.4.1/src/base/wiseerror_api.h	file
wise2/wise2.4.1/src/base/wiseerror_api.t	file
wise2/wise2.4.1/src/base/wisefile.c	file
wise2/wise2.4.1/src/base/wisefile.dy	file
wise2/wise2.4.1/src/base/wisefile.h	file
wise2/wise2.4.1/src/base/wisefile_api.h	file
wise2/wise2.4.1/src/base/wisefile_api.t	file
wise2/wise2.4.1/src/base/wisememman.c	file
wise2/wise2.4.1/src/base/wisememman.dy	file
wise2/wise2.4.1/src/base/wisememman.h	file
wise2/wise2.4.1/src/base/wiseoverlay.c	file
wise2/wise2.4.1/src/base/wiseoverlay.dy	file
wise2/wise2.4.1/src/base/wiseoverlay.h	file
wise2/wise2.4.1/src/base/wiserandom.c	file
wise2/wise2.4.1/src/base/wiserandom.dy	file
wise2/wise2.4.1/src/base/wiserandom.h	file
wise2/wise2.4.1/src/base/wisestreaminterface.c	file
wise2/wise2.4.1/src/base/wisestreaminterface.dy	file
wise2/wise2.4.1/src/base/wisestreaminterface.h	file
wise2/wise2.4.1/src/base/wisestring.c	file
wise2/wise2.4.1/src/base/wisestring.dy	file
wise2/wise2.4.1/src/base/wisestring.h	file
wise2/wise2.4.1/src/base/wisetime.c	file
wise2/wise2.4.1/src/base/wisetime.dy	file
wise2/wise2.4.1/src/base/wisetime.h	file
wise2/wise2.4.1/src/contig	directory
wise2/wise2.4.1/src/contig/contig.dy	file
wise2/wise2.4.1/src/contig/makefile	file
wise2/wise2.4.1/src/contig/overlap.dy	file
wise2/wise2.4.1/src/contig/testoverlap.c	file
wise2/wise2.4.1/src/corba	directory
wise2/wise2.4.1/src/corba/corba_singleton.c	file
wise2/wise2.4.1/src/corba/corba_singleton.h	file
wise2/wise2.4.1/src/corba/hspscan_corba.idl	file
wise2/wise2.4.1/src/corba/hspscan_corba_wrapper.c	file
wise2/wise2.4.1/src/corba/hspscan_corba_wrapper.h	file
wise2/wise2.4.1/src/corba/hspscan_server_impl.c	file
wise2/wise2.4.1/src/corba/hspscan_server_impl.h	file
wise2/wise2.4.1/src/corba/makefile	file
wise2/wise2.4.1/src/corba/scanwise_protein_index.c	file
wise2/wise2.4.1/src/corba/test_client.c	file
wise2/wise2.4.1/src/corba/test_server.c	file
wise2/wise2.4.1/src/corba/test_wrapper.c	file
wise2/wise2.4.1/src/dnaindex	directory
wise2/wise2.4.1/src/dnaindex/assembly.c	file
wise2/wise2.4.1/src/dnaindex/assembly.dy	file
wise2/wise2.4.1/src/dnaindex/assembly.h	file
wise2/wise2.4.1/src/dnaindex/assembly_sanger_project.c	file
wise2/wise2.4.1/src/dnaindex/assembly_sanger_project.dy	file
wise2/wise2.4.1/src/dnaindex/assembly_sanger_project.h	file
wise2/wise2.4.1/src/dnaindex/assembly_stream_cons.c	file
wise2/wise2.4.1/src/dnaindex/assembly_stream_cons.dy	file
wise2/wise2.4.1/src/dnaindex/assembly_stream_cons.h	file
wise2/wise2.4.1/src/dnaindex/assembly_stream_fasta.c	file
wise2/wise2.4.1/src/dnaindex/assembly_stream_fasta.dy	file
wise2/wise2.4.1/src/dnaindex/assembly_stream_fasta.h	file
wise2/wise2.4.1/src/dnaindex/assembly_stream_interface.c	file
wise2/wise2.4.1/src/dnaindex/assembly_stream_interface.dy	file
wise2/wise2.4.1/src/dnaindex/assembly_stream_interface.h	file
wise2/wise2.4.1/src/dnaindex/bigseqwise.c	file
wise2/wise2.4.1/src/dnaindex/calculate_compara_n50.pl	file
wise2/wise2.4.1/src/dnaindex/chhash.c	file
wise2/wise2.4.1/src/dnaindex/chhash.h	file
wise2/wise2.4.1/src/dnaindex/compara2dotplot.pl	file
wise2/wise2.4.1/src/dnaindex/comparapath.c	file
wise2/wise2.4.1/src/dnaindex/comparapath.dy	file
wise2/wise2.4.1/src/dnaindex/comparapath.h	file
wise2/wise2.4.1/src/dnaindex/compressed_protein_index.c	file
wise2/wise2.4.1/src/dnaindex/compressed_protein_index.dy	file
wise2/wise2.4.1/src/dnaindex/compressed_protein_index.h	file
wise2/wise2.4.1/src/dnaindex/dnamapping.c	file
wise2/wise2.4.1/src/dnaindex/dnamapping.dy	file
wise2/wise2.4.1/src/dnaindex/dnamapping.h	file
wise2/wise2.4.1/src/dnaindex/dnanumber.c	file
wise2/wise2.4.1/src/dnaindex/dnanumber.dy	file
wise2/wise2.4.1/src/dnaindex/dnanumber.h	file
wise2/wise2.4.1/src/dnaindex/eulerindex.c	file
wise2/wise2.4.1/src/dnaindex/eulerindex.dy	file
wise2/wise2.4.1/src/dnaindex/eulerindex.h	file
wise2/wise2.4.1/src/dnaindex/findbad_kmer.c	file
wise2/wise2.4.1/src/dnaindex/kmer_assembly.c	file
wise2/wise2.4.1/src/dnaindex/kmer_assembly.dy	file
wise2/wise2.4.1/src/dnaindex/kmer_assembly.h	file
wise2/wise2.4.1/src/dnaindex/kmer_assembly_contig.c	file
wise2/wise2.4.1/src/dnaindex/kmer_assembly_contig.dy	file
wise2/wise2.4.1/src/dnaindex/kmer_assembly_contig.h	file
wise2/wise2.4.1/src/dnaindex/kmer_assembly_error.c	file
wise2/wise2.4.1/src/dnaindex/kmer_assembly_error.dy	file
wise2/wise2.4.1/src/dnaindex/kmer_assembly_error.h	file
wise2/wise2.4.1/src/dnaindex/kmer_assembly_untangler.c	file
wise2/wise2.4.1/src/dnaindex/kmer_assembly_untangler.dy	file
wise2/wise2.4.1/src/dnaindex/kmer_assembly_untangler.h	file
wise2/wise2.4.1/src/dnaindex/kmer_count.c	file
wise2/wise2.4.1/src/dnaindex/kmer_count.dy	file
wise2/wise2.4.1/src/dnaindex/kmer_count.h	file
wise2/wise2.4.1/src/dnaindex/kmer_direct.c	file
wise2/wise2.4.1/src/dnaindex/kmer_direct.dy	file
wise2/wise2.4.1/src/dnaindex/kmer_direct.h	file
wise2/wise2.4.1/src/dnaindex/kmer_glib_index.c	file
wise2/wise2.4.1/src/dnaindex/kmer_glib_index.dy	file
wise2/wise2.4.1/src/dnaindex/kmer_glib_index.h	file
wise2/wise2.4.1/src/dnaindex/kmer_hash.c	file
wise2/wise2.4.1/src/dnaindex/kmer_hash.dy	file
wise2/wise2.4.1/src/dnaindex/kmer_hash.h	file
wise2/wise2.4.1/src/dnaindex/kmer_index_interface.c	file
wise2/wise2.4.1/src/dnaindex/kmer_index_interface.dy	file
wise2/wise2.4.1/src/dnaindex/kmer_index_interface.h	file
wise2/wise2.4.1/src/dnaindex/kmer_stat.c	file
wise2/wise2.4.1/src/dnaindex/kwise.c	file
wise2/wise2.4.1/src/dnaindex/largeseqreader.c	file
wise2/wise2.4.1/src/dnaindex/largeseqreader.dy	file
wise2/wise2.4.1/src/dnaindex/largeseqreader.h	file
wise2/wise2.4.1/src/dnaindex/linkindex.c	file
wise2/wise2.4.1/src/dnaindex/linkindex.dy	file
wise2/wise2.4.1/src/dnaindex/linkindex.h	file
wise2/wise2.4.1/src/dnaindex/make_shotgun.c	file
wise2/wise2.4.1/src/dnaindex/make_shotgun.pl	file
wise2/wise2.4.1/src/dnaindex/makefile	file
wise2/wise2.4.1/src/dnaindex/shotgun.c	file
wise2/wise2.4.1/src/dnaindex/shotgun.dy	file
wise2/wise2.4.1/src/dnaindex/shotgun.h	file
wise2/wise2.4.1/src/dnaindex/singleseqspace.c	file
wise2/wise2.4.1/src/dnaindex/singleseqspace.dy	file
wise2/wise2.4.1/src/dnaindex/singleseqspace.h	file
wise2/wise2.4.1/src/dnaindex/tangle.fa	file
wise2/wise2.4.1/src/dnaindex/test_compara.c	file
wise2/wise2.4.1/src/dnaindex/test_dnanumber.c	file
wise2/wise2.4.1/src/dnaindex/test_euler.c	file
wise2/wise2.4.1/src/dnaindex/test_kmer.c	file
wise2/wise2.4.1/src/dnaindex/test_linkindex.c	file
wise2/wise2.4.1/src/dnaindex/vectorindex.c	file
wise2/wise2.4.1/src/dnaindex/vectorindex.dy	file
wise2/wise2.4.1/src/dnaindex/vectorindex.h	file
wise2/wise2.4.1/src/dnaindex/assembly	directory
wise2/wise2.4.1/src/dnaindex/assembly/assemblygraph.dy	file
wise2/wise2.4.1/src/dnaindex/assembly/assemblypath.dy	file
wise2/wise2.4.1/src/dnaindex/assembly/assemblystats.dy	file
wise2/wise2.4.1/src/dnaindex/assembly/badkmer.c	file
wise2/wise2.4.1/src/dnaindex/assembly/basegraph.dy	file
wise2/wise2.4.1/src/dnaindex/assembly/depthmanager.dy	file
wise2/wise2.4.1/src/dnaindex/assembly/grapherror.dy	file
wise2/wise2.4.1/src/dnaindex/assembly/graphmanager.dy	file
wise2/wise2.4.1/src/dnaindex/assembly/graphtangle.dy	file
wise2/wise2.4.1/src/dnaindex/assembly/makefile	file
wise2/wise2.4.1/src/dnaindex/assembly/pathwise.c	file
wise2/wise2.4.1/src/dnaindex/assembly/supertangle.dy	file
wise2/wise2.4.1/src/dnaindex/assembly/test_assemblygraph.c	file
wise2/wise2.4.1/src/dnaindex/assembly/test_basegraph.c	file
wise2/wise2.4.1/src/dnaindex/assembly/test_graphtangle.c	file
wise2/wise2.4.1/src/dyc	directory
wise2/wise2.4.1/src/dyc/api.c	file
wise2/wise2.4.1/src/dyc/api.dy	file
wise2/wise2.4.1/src/dyc/api.h	file
wise2/wise2.4.1/src/dyc/calc.l	file
wise2/wise2.4.1/src/dyc/calc.y	file
wise2/wise2.4.1/src/dyc/compugen.c	file
wise2/wise2.4.1/src/dyc/compugen.h	file
wise2/wise2.4.1/src/dyc/dbmpi.c	file
wise2/wise2.4.1/src/dyc/dbmpi.dy	file
wise2/wise2.4.1/src/dyc/dbmpi.h	file
wise2/wise2.4.1/src/dyc/dbthread.c	file
wise2/wise2.4.1/src/dyc/dbthread.dy	file
wise2/wise2.4.1/src/dyc/dbthread.h	file
wise2/wise2.4.1/src/dyc/display.c	file
wise2/wise2.4.1/src/dyc/display.dy	file
wise2/wise2.4.1/src/dyc/display.h	file
wise2/wise2.4.1/src/dyc/docugen.c	file
wise2/wise2.4.1/src/dyc/dpimpl.c	file
wise2/wise2.4.1/src/dyc/dpimpl.dy	file
wise2/wise2.4.1/src/dyc/dpimpl.h	file
wise2/wise2.4.1/src/dyc/dy2om.c	file
wise2/wise2.4.1/src/dyc/dy2om.dy	file
wise2/wise2.4.1/src/dyc/dy2om.h	file
wise2/wise2.4.1/src/dyc/dyc.c	file
wise2/wise2.4.1/src/dyc/dymain.c	file
wise2/wise2.4.1/src/dyc/dymain.dy	file
wise2/wise2.4.1/src/dyc/dymain.h	file
wise2/wise2.4.1/src/dyc/dyna2.c	file
wise2/wise2.4.1/src/dyc/dyna2.dy	file
wise2/wise2.4.1/src/dyc/dyna2.h	file
wise2/wise2.4.1/src/dyc/dynadb.c	file
wise2/wise2.4.1/src/dyc/dynadb.dy	file
wise2/wise2.4.1/src/dyc/dynadb.h	file
wise2/wise2.4.1/src/dyc/dynadebug.c	file
wise2/wise2.4.1/src/dyc/dynadebug.dy	file
wise2/wise2.4.1/src/dyc/dynadebug.h	file
wise2/wise2.4.1/src/dyc/dynafunc.c	file
wise2/wise2.4.1/src/dyc/dynafunc.dy	file
wise2/wise2.4.1/src/dyc/dynafunc.h	file
wise2/wise2.4.1/src/dyc/dynashadow.c	file
wise2/wise2.4.1/src/dyc/dynashadow.dy	file
wise2/wise2.4.1/src/dyc/dynashadow.h	file
wise2/wise2.4.1/src/dyc/dynfile.c	file
wise2/wise2.4.1/src/dyc/dynfile.dy	file
wise2/wise2.4.1/src/dyc/dynfile.h	file
wise2/wise2.4.1/src/dyc/dyshatter.c	file
wise2/wise2.4.1/src/dyc/dyshatter.dy	file
wise2/wise2.4.1/src/dyc/dyshatter.h	file
wise2/wise2.4.1/src/dyc/exprtree.c	file
wise2/wise2.4.1/src/dyc/exprtree.dy	file
wise2/wise2.4.1/src/dyc/exprtree.h	file
wise2/wise2.4.1/src/dyc/friend.c	file
wise2/wise2.4.1/src/dyc/friend.dy	file
wise2/wise2.4.1/src/dyc/friend.h	file
wise2/wise2.4.1/src/dyc/ftext.c	file
wise2/wise2.4.1/src/dyc/ftext.dy	file
wise2/wise2.4.1/src/dyc/ftext.h	file
wise2/wise2.4.1/src/dyc/funcinfo.c	file
wise2/wise2.4.1/src/dyc/funcinfo.dy	file
wise2/wise2.4.1/src/dyc/funcinfo.h	file
wise2/wise2.4.1/src/dyc/input.c	file
wise2/wise2.4.1/src/dyc/input.dy	file
wise2/wise2.4.1/src/dyc/input.h	file
wise2/wise2.4.1/src/dyc/inputfile.c	file
wise2/wise2.4.1/src/dyc/inputfile.dy	file
wise2/wise2.4.1/src/dyc/inputfile.h	file
wise2/wise2.4.1/src/dyc/kbestsearch.c	file
wise2/wise2.4.1/src/dyc/kbestsearch.dy	file
wise2/wise2.4.1/src/dyc/kbestsearch.h	file
wise2/wise2.4.1/src/dyc/labelmaster.c	file
wise2/wise2.4.1/src/dyc/labelmaster.dy	file
wise2/wise2.4.1/src/dyc/labelmaster.h	file
wise2/wise2.4.1/src/dyc/lex.yy.c	file
wise2/wise2.4.1/src/dyc/LICENSE	file
wise2/wise2.4.1/src/dyc/linkmap.c	file
wise2/wise2.4.1/src/dyc/linkmap.dy	file
wise2/wise2.4.1/src/dyc/linkmap.h	file
wise2/wise2.4.1/src/dyc/makefile	file
wise2/wise2.4.1/src/dyc/method.c	file
wise2/wise2.4.1/src/dyc/method.dy	file
wise2/wise2.4.1/src/dyc/method.h	file
wise2/wise2.4.1/src/dyc/module.c	file
wise2/wise2.4.1/src/dyc/module.h	file
wise2/wise2.4.1/src/dyc/modulefunc.c	file
wise2/wise2.4.1/src/dyc/modulefunc.dy	file
wise2/wise2.4.1/src/dyc/modulefunc.h	file
wise2/wise2.4.1/src/dyc/moduleinfo.c	file
wise2/wise2.4.1/src/dyc/moduleinfo.dy	file
wise2/wise2.4.1/src/dyc/moduleinfo.h	file
wise2/wise2.4.1/src/dyc/objectinfo.c	file
wise2/wise2.4.1/src/dyc/objectinfo.dy	file
wise2/wise2.4.1/src/dyc/objectinfo.h	file
wise2/wise2.4.1/src/dyc/optimiser.c	file
wise2/wise2.4.1/src/dyc/optimiser.dy	file
wise2/wise2.4.1/src/dyc/optimiser.h	file
wise2/wise2.4.1/src/dyc/probal.c	file
wise2/wise2.4.1/src/dyc/probal.dy	file
wise2/wise2.4.1/src/dyc/probal.h	file
wise2/wise2.4.1/src/dyc/telegraph.c	file
wise2/wise2.4.1/src/dyc/telegraph.dy	file
wise2/wise2.4.1/src/dyc/telegraph.h	file
wise2/wise2.4.1/src/dyc/type.c	file
wise2/wise2.4.1/src/dyc/type.dy	file
wise2/wise2.4.1/src/dyc/type.h	file
wise2/wise2.4.1/src/dyc/variable.c	file
wise2/wise2.4.1/src/dyc/variable.dy	file
wise2/wise2.4.1/src/dyc/variable.h	file
wise2/wise2.4.1/src/dyc/wisec.c	file
wise2/wise2.4.1/src/dyc/wisec.dy	file
wise2/wise2.4.1/src/dyc/wisec.h	file
wise2/wise2.4.1/src/dyc/y.tab.c	file
wise2/wise2.4.1/src/dyc/y.tab.h	file
wise2/wise2.4.1/src/dynamite_examples	directory
wise2/wise2.4.1/src/dynamite_examples/cdna2genomic.dy	file
wise2/wise2.4.1/src/dynamite_examples/dbsearch.c	file
wise2/wise2.4.1/src/dynamite_examples/est.dna	file
wise2/wise2.4.1/src/dynamite_examples/est2gen.c	file
wise2/wise2.4.1/src/dynamite_examples/estgendisplay.c	file
wise2/wise2.4.1/src/dynamite_examples/estgendisplay.dy	file
wise2/wise2.4.1/src/dynamite_examples/estgendisplay.h	file
wise2/wise2.4.1/src/dynamite_examples/genomic.dna	file
wise2/wise2.4.1/src/dynamite_examples/makefile	file
wise2/wise2.4.1/src/dynamite_examples/proteinsw.dy	file
wise2/wise2.4.1/src/dynamite_examples/psw.c	file
wise2/wise2.4.1/src/dynamite_examples/README	file
wise2/wise2.4.1/src/dynamite_examples/roac.pep	file
wise2/wise2.4.1/src/dynamite_examples/road.pep	file
wise2/wise2.4.1/src/dynamite_examples/seqaligndisplay.c	file
wise2/wise2.4.1/src/dynamite_examples/seqaligndisplay.dy	file
wise2/wise2.4.1/src/dynamite_examples/seqaligndisplay.h	file
wise2/wise2.4.1/src/dynlibsrc	directory
wise2/wise2.4.1/src/dynlibsrc/aln.c	file
wise2/wise2.4.1/src/dynlibsrc/aln.dy	file
wise2/wise2.4.1/src/dynlibsrc/aln.h	file
wise2/wise2.4.1/src/dynlibsrc/aln.pod	file
wise2/wise2.4.1/src/dynlibsrc/aln.tex	file
wise2/wise2.4.1/src/dynlibsrc/aln.typemap	file
wise2/wise2.4.1/src/dynlibsrc/aln.xs	file
wise2/wise2.4.1/src/dynlibsrc/aln_api.h	file
wise2/wise2.4.1/src/dynlibsrc/aln_api.t	file
wise2/wise2.4.1/src/dynlibsrc/alnconvert.c	file
wise2/wise2.4.1/src/dynlibsrc/alnconvert.dy	file
wise2/wise2.4.1/src/dynlibsrc/alnconvert.h	file
wise2/wise2.4.1/src/dynlibsrc/alnrange.c	file
wise2/wise2.4.1/src/dynlibsrc/alnrange.dy	file
wise2/wise2.4.1/src/dynlibsrc/alnrange.h	file
wise2/wise2.4.1/src/dynlibsrc/alnrange.pod	file
wise2/wise2.4.1/src/dynlibsrc/alnrange.tex	file
wise2/wise2.4.1/src/dynlibsrc/alnrange.typemap	file
wise2/wise2.4.1/src/dynlibsrc/alnrange.xs	file
wise2/wise2.4.1/src/dynlibsrc/alnrange_api.h	file
wise2/wise2.4.1/src/dynlibsrc/alnrange_api.t	file
wise2/wise2.4.1/src/dynlibsrc/arrayseqlookup.c	file
wise2/wise2.4.1/src/dynlibsrc/arrayseqlookup.dy	file
wise2/wise2.4.1/src/dynlibsrc/arrayseqlookup.h	file
wise2/wise2.4.1/src/dynlibsrc/asciibtcanvas.c	file
wise2/wise2.4.1/src/dynlibsrc/asciibtcanvas.dy	file
wise2/wise2.4.1/src/dynlibsrc/asciibtcanvas.h	file
wise2/wise2.4.1/src/dynlibsrc/basematrix.c	file
wise2/wise2.4.1/src/dynlibsrc/basematrix.dy	file
wise2/wise2.4.1/src/dynlibsrc/basematrix.h	file
wise2/wise2.4.1/src/dynlibsrc/basematrix.pod	file
wise2/wise2.4.1/src/dynlibsrc/basematrix.tex	file
wise2/wise2.4.1/src/dynlibsrc/basematrix.typemap	file
wise2/wise2.4.1/src/dynlibsrc/basematrix.xs	file
wise2/wise2.4.1/src/dynlibsrc/basematrix_api.h	file
wise2/wise2.4.1/src/dynlibsrc/basematrix_api.t	file
wise2/wise2.4.1/src/dynlibsrc/btcanvas.c	file
wise2/wise2.4.1/src/dynlibsrc/btcanvas.dy	file
wise2/wise2.4.1/src/dynlibsrc/btcanvas.h	file
wise2/wise2.4.1/src/dynlibsrc/cdna.c	file
wise2/wise2.4.1/src/dynlibsrc/cdna.dy	file
wise2/wise2.4.1/src/dynlibsrc/cdna.h	file
wise2/wise2.4.1/src/dynlibsrc/cdna.pod	file
wise2/wise2.4.1/src/dynlibsrc/cdna.tex	file
wise2/wise2.4.1/src/dynlibsrc/cdna.typemap	file
wise2/wise2.4.1/src/dynlibsrc/cdna.xs	file
wise2/wise2.4.1/src/dynlibsrc/cdna_api.h	file
wise2/wise2.4.1/src/dynlibsrc/cdna_api.t	file
wise2/wise2.4.1/src/dynlibsrc/cdnadb.c	file
wise2/wise2.4.1/src/dynlibsrc/cdnadb.dy	file
wise2/wise2.4.1/src/dynlibsrc/cdnadb.h	file
wise2/wise2.4.1/src/dynlibsrc/cdnadb.pod	file
wise2/wise2.4.1/src/dynlibsrc/cdnadb.tex	file
wise2/wise2.4.1/src/dynlibsrc/cdnadb.typemap	file
wise2/wise2.4.1/src/dynlibsrc/cdnadb.xs	file
wise2/wise2.4.1/src/dynlibsrc/cdnadb_api.h	file
wise2/wise2.4.1/src/dynlibsrc/cdnadb_api.t	file
wise2/wise2.4.1/src/dynlibsrc/codon.c	file
wise2/wise2.4.1/src/dynlibsrc/codon.dy	file
wise2/wise2.4.1/src/dynlibsrc/codon.h	file
wise2/wise2.4.1/src/dynlibsrc/codon.pod	file
wise2/wise2.4.1/src/dynlibsrc/codon.tex	file
wise2/wise2.4.1/src/dynlibsrc/codon.typemap	file
wise2/wise2.4.1/src/dynlibsrc/codon.xs	file
wise2/wise2.4.1/src/dynlibsrc/codon_api.h	file
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wise2/wise2.4.1/src/dynlibsrc/transcript.pod	file
wise2/wise2.4.1/src/dynlibsrc/transcript.tex	file
wise2/wise2.4.1/src/dynlibsrc/transcript.typemap	file
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wise2/wise2.4.1/src/dynlibsrc/transcript_api.h	file
wise2/wise2.4.1/src/dynlibsrc/transcript_api.t	file
wise2/wise2.4.1/src/dynlibsrc/translation.c	file
wise2/wise2.4.1/src/dynlibsrc/translation.dy	file
wise2/wise2.4.1/src/dynlibsrc/translation.h	file
wise2/wise2.4.1/src/dynlibsrc/translation.pod	file
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wise2/wise2.4.1/src/dynlibsrc/translation_api.h	file
wise2/wise2.4.1/src/dynlibsrc/translation_api.t	file
wise2/wise2.4.1/src/external	directory
wise2/wise2.4.1/src/external/makefile	file
wise2/wise2.4.1/src/external/mott	directory
wise2/wise2.4.1/src/external/mott/gaplib.c	file
wise2/wise2.4.1/src/external/mott/gapstat.h	file
wise2/wise2.4.1/src/external/mott/makefile	file
wise2/wise2.4.1/src/external/mott/mott_api.c	file
wise2/wise2.4.1/src/external/mott/mott_api.h	file
wise2/wise2.4.1/src/external/mott/wise2_mott_bridge.c	file
wise2/wise2.4.1/src/external/mott/wise2_mott_bridge.h	file
wise2/wise2.4.1/src/haplotype	directory
wise2/wise2.4.1/src/haplotype/haplotype.dy	file
wise2/wise2.4.1/src/haplotype/individual.dy	file
wise2/wise2.4.1/src/haplotype/markerframework.dy	file
wise2/wise2.4.1/src/HMMer2	directory
wise2/wise2.4.1/src/HMMer2/aligneval.c	file
wise2/wise2.4.1/src/HMMer2/alignio.c	file
wise2/wise2.4.1/src/HMMer2/alphabet.c	file
wise2/wise2.4.1/src/HMMer2/cluster.c	file
wise2/wise2.4.1/src/HMMer2/config.h	file
wise2/wise2.4.1/src/HMMer2/core_algorithms.c	file
wise2/wise2.4.1/src/HMMer2/dayhoff.c	file
wise2/wise2.4.1/src/HMMer2/debug.c	file
wise2/wise2.4.1/src/HMMer2/emit.c	file
wise2/wise2.4.1/src/HMMer2/emulation.c	file
wise2/wise2.4.1/src/HMMer2/file.c	file
wise2/wise2.4.1/src/HMMer2/funcs.h	file
wise2/wise2.4.1/src/HMMer2/getopt.c	file
wise2/wise2.4.1/src/HMMer2/globals.h	file
wise2/wise2.4.1/src/HMMer2/GNULICENSE	file
wise2/wise2.4.1/src/HMMer2/gnuregex.c	file
wise2/wise2.4.1/src/HMMer2/gnuregex.h	file
wise2/wise2.4.1/src/HMMer2/histogram.c	file
wise2/wise2.4.1/src/HMMer2/hmmalign.c	file
wise2/wise2.4.1/src/HMMer2/hmmbuild.c	file
wise2/wise2.4.1/src/HMMer2/hmmcalibrate.c	file
wise2/wise2.4.1/src/HMMer2/hmmconvert.c	file
wise2/wise2.4.1/src/HMMer2/hmmemit.c	file
wise2/wise2.4.1/src/HMMer2/hmmio.c	file
wise2/wise2.4.1/src/HMMer2/hmmpfam.c	file
wise2/wise2.4.1/src/HMMer2/hmmsearch.c	file
wise2/wise2.4.1/src/HMMer2/interleaved.c	file
wise2/wise2.4.1/src/HMMer2/iupac.c	file
wise2/wise2.4.1/src/HMMer2/Makefile	file
wise2/wise2.4.1/src/HMMer2/masks.c	file
wise2/wise2.4.1/src/HMMer2/mathsupport.c	file
wise2/wise2.4.1/src/HMMer2/misc.c	file
wise2/wise2.4.1/src/HMMer2/modelmakers.c	file
wise2/wise2.4.1/src/HMMer2/msf.c	file
wise2/wise2.4.1/src/HMMer2/plan7.c	file
wise2/wise2.4.1/src/HMMer2/plan9.c	file
wise2/wise2.4.1/src/HMMer2/prior.c	file
wise2/wise2.4.1/src/HMMer2/revcomp.c	file
wise2/wise2.4.1/src/HMMer2/selex.c	file
wise2/wise2.4.1/src/HMMer2/sqerror.c	file
wise2/wise2.4.1/src/HMMer2/sqfuncs.h	file
wise2/wise2.4.1/src/HMMer2/sqio.c	file
wise2/wise2.4.1/src/HMMer2/squid.h	file
wise2/wise2.4.1/src/HMMer2/sre_ctype.c	file
wise2/wise2.4.1/src/HMMer2/sre_math.c	file
wise2/wise2.4.1/src/HMMer2/sre_string.c	file
wise2/wise2.4.1/src/HMMer2/stack.c	file
wise2/wise2.4.1/src/HMMer2/structs.h	file
wise2/wise2.4.1/src/HMMer2/tophits.c	file
wise2/wise2.4.1/src/HMMer2/trace.c	file
wise2/wise2.4.1/src/HMMer2/translate.c	file
wise2/wise2.4.1/src/HMMer2/types.c	file
wise2/wise2.4.1/src/HMMer2/version.h	file
wise2/wise2.4.1/src/HMMer2/weight.c	file
wise2/wise2.4.1/src/models	directory
wise2/wise2.4.1/src/models/abc.c	file
wise2/wise2.4.1/src/models/abc.dy	file
wise2/wise2.4.1/src/models/abc.h	file
wise2/wise2.4.1/src/models/aligngenemodel.c	file
wise2/wise2.4.1/src/models/aligngenemodel.dy	file
wise2/wise2.4.1/src/models/aligngenemodel.h	file
wise2/wise2.4.1/src/models/alignwise.c	file
wise2/wise2.4.1/src/models/alignwisedp.c	file
wise2/wise2.4.1/src/models/alignwisedp.dy	file
wise2/wise2.4.1/src/models/alignwisedp.h	file
wise2/wise2.4.1/src/models/amplimer_resolver.c	file
wise2/wise2.4.1/src/models/bigdba.c	file
wise2/wise2.4.1/src/models/bigdba.dy	file
wise2/wise2.4.1/src/models/bigdba.h	file
wise2/wise2.4.1/src/models/cdnawise.c	file
wise2/wise2.4.1/src/models/cdnawise10.c	file
wise2/wise2.4.1/src/models/cdnawise10.dy	file
wise2/wise2.4.1/src/models/cdnawise10.h	file
wise2/wise2.4.1/src/models/cdparser.c	file
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wise2/wise2.4.1/src/models/cdparser.h	file
wise2/wise2.4.1/src/models/cdparser.pod	file
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wise2/wise2.4.1/src/models/cdparser_api.h	file
wise2/wise2.4.1/src/models/cdparser_api.t	file
wise2/wise2.4.1/src/models/clonewise.c	file
wise2/wise2.4.1/src/models/clonewisedp.c	file
wise2/wise2.4.1/src/models/clonewisedp.dy	file
wise2/wise2.4.1/src/models/clonewisedp.h	file
wise2/wise2.4.1/src/models/dba.c	file
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wise2/wise2.4.1/src/models/dba.h	file
wise2/wise2.4.1/src/models/dbac.c	file
wise2/wise2.4.1/src/models/dbadisplay.c	file
wise2/wise2.4.1/src/models/dbadisplay.dy	file
wise2/wise2.4.1/src/models/dbadisplay.h	file
wise2/wise2.4.1/src/models/dnaalign.c	file
wise2/wise2.4.1/src/models/dnaalign.dy	file
wise2/wise2.4.1/src/models/dnaalign.h	file
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wise2/wise2.4.1/src/models/dnaalign_api.h	file
wise2/wise2.4.1/src/models/dnaalign_api.t	file
wise2/wise2.4.1/src/models/dnahmm.c	file
wise2/wise2.4.1/src/models/dnahmm.dy	file
wise2/wise2.4.1/src/models/dnahmm.h	file
wise2/wise2.4.1/src/models/dnal.c	file
wise2/wise2.4.1/src/models/dnamatcher.c	file
wise2/wise2.4.1/src/models/dnamatcher.dy	file
wise2/wise2.4.1/src/models/dnamatcher.h	file
wise2/wise2.4.1/src/models/dnaprofile.c	file
wise2/wise2.4.1/src/models/dnaprofile.dy	file
wise2/wise2.4.1/src/models/dnaprofile.h	file
wise2/wise2.4.1/src/models/dnaprofiledp.c	file
wise2/wise2.4.1/src/models/dnaprofiledp.dy	file
wise2/wise2.4.1/src/models/dnaprofiledp.h	file
wise2/wise2.4.1/src/models/dnaprofileengine.c	file
wise2/wise2.4.1/src/models/dnaprofileengine.dy	file
wise2/wise2.4.1/src/models/dnaprofileengine.h	file
wise2/wise2.4.1/src/models/dnawise.c	file
wise2/wise2.4.1/src/models/editdist.c	file
wise2/wise2.4.1/src/models/editdistdp.c	file
wise2/wise2.4.1/src/models/editdistdp.dy	file
wise2/wise2.4.1/src/models/editdistdp.h	file
wise2/wise2.4.1/src/models/est_evidence.c	file
wise2/wise2.4.1/src/models/est_evidence.dy	file
wise2/wise2.4.1/src/models/est_evidence.h	file
wise2/wise2.4.1/src/models/estfrag3.c	file
wise2/wise2.4.1/src/models/estfrag3.dy	file
wise2/wise2.4.1/src/models/estfrag3.h	file
wise2/wise2.4.1/src/models/estloop3.c	file
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wise2/wise2.4.1/src/models/estloop3.h	file
wise2/wise2.4.1/src/models/estquick3.c	file
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wise2/wise2.4.1/src/models/estslimloop.c	file
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wise2/wise2.4.1/src/models/estslimloop.h	file
wise2/wise2.4.1/src/models/estwise.c	file
wise2/wise2.4.1/src/models/estwise3.c	file
wise2/wise2.4.1/src/models/estwise3.dy	file
wise2/wise2.4.1/src/models/estwise3.h	file
wise2/wise2.4.1/src/models/estwisedb.c	file
wise2/wise2.4.1/src/models/estwrap.c	file
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wise2/wise2.4.1/src/models/estwrap_api.h	file
wise2/wise2.4.1/src/models/estwrap_api.t	file
wise2/wise2.4.1/src/models/evopairwise.c	file
wise2/wise2.4.1/src/models/fivestar.c	file
wise2/wise2.4.1/src/models/fivestarscan.c	file
wise2/wise2.4.1/src/models/fivestarsearch.c	file
wise2/wise2.4.1/src/models/fivestate.c	file
wise2/wise2.4.1/src/models/fivestate.dy	file
wise2/wise2.4.1/src/models/fivestate.h	file
wise2/wise2.4.1/src/models/fivestatemodel.c	file
wise2/wise2.4.1/src/models/fivestatemodel.dy	file
wise2/wise2.4.1/src/models/fivestatemodel.h	file
wise2/wise2.4.1/src/models/genedisplay.c	file
wise2/wise2.4.1/src/models/genedisplay.dy	file
wise2/wise2.4.1/src/models/genedisplay.h	file
wise2/wise2.4.1/src/models/genedisplay.pod	file
wise2/wise2.4.1/src/models/genedisplay.tex	file
wise2/wise2.4.1/src/models/genedisplay.typemap	file
wise2/wise2.4.1/src/models/genedisplay.xs	file
wise2/wise2.4.1/src/models/genedisplay_api.h	file
wise2/wise2.4.1/src/models/genedisplay_api.t	file
wise2/wise2.4.1/src/models/genefrequency.c	file
wise2/wise2.4.1/src/models/genefrequency.dy	file
wise2/wise2.4.1/src/models/genefrequency.h	file
wise2/wise2.4.1/src/models/genefrequency.pod	file
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wise2/wise2.4.1/src/models/genefrequency.typemap	file
wise2/wise2.4.1/src/models/genefrequency.xs	file
wise2/wise2.4.1/src/models/genefrequency_api.h	file
wise2/wise2.4.1/src/models/genefrequency_api.t	file
wise2/wise2.4.1/src/models/geneloop21.c	file
wise2/wise2.4.1/src/models/geneloop21.dy	file
wise2/wise2.4.1/src/models/geneloop21.h	file
wise2/wise2.4.1/src/models/geneloop6.c	file
wise2/wise2.4.1/src/models/geneloop6.dy	file
wise2/wise2.4.1/src/models/geneloop6.h	file
wise2/wise2.4.1/src/models/geneoutput.c	file
wise2/wise2.4.1/src/models/geneoutput.dy	file
wise2/wise2.4.1/src/models/geneoutput.h	file
wise2/wise2.4.1/src/models/geneparameter.c	file
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wise2/wise2.4.1/src/models/geneparameter_api.h	file
wise2/wise2.4.1/src/models/geneparameter_api.t	file
wise2/wise2.4.1/src/models/geneparser21.c	file
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wise2/wise2.4.1/src/models/genephase6.c	file
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wise2/wise2.4.1/src/models/genephase6.h	file
wise2/wise2.4.1/src/models/genestats.c	file
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wise2/wise2.4.1/src/models/genestretch6.c	file
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wise2/wise2.4.1/src/models/genestretch6.h	file
wise2/wise2.4.1/src/models/geneutil.c	file
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wise2/wise2.4.1/src/models/geneutil.h	file
wise2/wise2.4.1/src/models/genewise.c	file
wise2/wise2.4.1/src/models/genewise21.c	file
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wise2/wise2.4.1/src/models/genewisedb.c	file
wise2/wise2.4.1/src/models/genewisehsp.c	file
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wise2/wise2.4.1/src/models/genewisemodel.c	file
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wise2/wise2.4.1/src/models/genewisemodeldb.c	file
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wise2/wise2.4.1/src/models/genewisemodeldb.h	file
wise2/wise2.4.1/src/models/genome_evidence.c	file
wise2/wise2.4.1/src/models/genome_evidence.dy	file
wise2/wise2.4.1/src/models/genome_evidence.h	file
wise2/wise2.4.1/src/models/genomewise.c	file
wise2/wise2.4.1/src/models/genomewise9.c	file
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wise2/wise2.4.1/src/models/genomewise9.h	file
wise2/wise2.4.1/src/models/GNULICENSE	file
wise2/wise2.4.1/src/models/gwlite.c	file
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wise2/wise2.4.1/src/models/gwquickdb.c	file
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wise2/wise2.4.1/src/models/hmminfo.c	file
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wise2/wise2.4.1/src/models/largeblockdp.c	file
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wise2/wise2.4.1/src/models/makerandomdb.c	file
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wise2/wise2.4.1/src/models/pba.dy	file
wise2/wise2.4.1/src/models/pba.h	file
wise2/wise2.4.1/src/models/pfamhmmer1db.c	file
wise2/wise2.4.1/src/models/pfamhmmer1db.dy	file
wise2/wise2.4.1/src/models/pfamhmmer1db.h	file
wise2/wise2.4.1/src/models/pfamhmmer1db.pod	file
wise2/wise2.4.1/src/models/pfamhmmer1db.tex	file
wise2/wise2.4.1/src/models/pfamhmmer1db.typemap	file
wise2/wise2.4.1/src/models/pfamhmmer1db.xs	file
wise2/wise2.4.1/src/models/pfamhmmer1db_api.h	file
wise2/wise2.4.1/src/models/pfamhmmer1db_api.t	file
wise2/wise2.4.1/src/models/phasemodel.c	file
wise2/wise2.4.1/src/models/phasemodel.dy	file
wise2/wise2.4.1/src/models/phasemodel.h	file
wise2/wise2.4.1/src/models/promotercluster.c	file
wise2/wise2.4.1/src/models/promoterwise.c	file
wise2/wise2.4.1/src/models/proteinsw.c	file
wise2/wise2.4.1/src/models/proteinsw.dy	file
wise2/wise2.4.1/src/models/proteinsw.h	file
wise2/wise2.4.1/src/models/pseudowise.c	file
wise2/wise2.4.1/src/models/pseudowise7.c	file
wise2/wise2.4.1/src/models/pseudowise7.dy	file
wise2/wise2.4.1/src/models/pseudowise7.h	file
wise2/wise2.4.1/src/models/psw.c	file
wise2/wise2.4.1/src/models/pswdb.c	file
wise2/wise2.4.1/src/models/pwmdna.c	file
wise2/wise2.4.1/src/models/pwmdna.dy	file
wise2/wise2.4.1/src/models/pwmdna.h	file
wise2/wise2.4.1/src/models/revcomp.c	file
wise2/wise2.4.1/src/models/scanwisep.c	file
wise2/wise2.4.1/src/models/seqaligndisplay.c	file
wise2/wise2.4.1/src/models/seqaligndisplay.dy	file
wise2/wise2.4.1/src/models/seqaligndisplay.h	file
wise2/wise2.4.1/src/models/seqaligndisplay.pod	file
wise2/wise2.4.1/src/models/seqaligndisplay.tex	file
wise2/wise2.4.1/src/models/seqaligndisplay.typemap	file
wise2/wise2.4.1/src/models/seqaligndisplay.xs	file
wise2/wise2.4.1/src/models/seqaligndisplay_api.h	file
wise2/wise2.4.1/src/models/seqaligndisplay_api.t	file
wise2/wise2.4.1/src/models/seqerror.c	file
wise2/wise2.4.1/src/models/seqerror.dy	file
wise2/wise2.4.1/src/models/seqerror.h	file
wise2/wise2.4.1/src/models/seqhit.c	file
wise2/wise2.4.1/src/models/seqhit.dy	file
wise2/wise2.4.1/src/models/seqhit.h	file
wise2/wise2.4.1/src/models/seqhit.pod	file
wise2/wise2.4.1/src/models/seqhit.tex	file
wise2/wise2.4.1/src/models/seqhit.typemap	file
wise2/wise2.4.1/src/models/seqhit.xs	file
wise2/wise2.4.1/src/models/seqhit_api.h	file
wise2/wise2.4.1/src/models/seqhit_api.t	file
wise2/wise2.4.1/src/models/seqlist.c	file
wise2/wise2.4.1/src/models/slimdba.c	file
wise2/wise2.4.1/src/models/slimdba.dy	file
wise2/wise2.4.1/src/models/slimdba.h	file
wise2/wise2.4.1/src/models/splicesitemodeler.c	file
wise2/wise2.4.1/src/models/splicesitemodeler.dy	file
wise2/wise2.4.1/src/models/splicesitemodeler.h	file
wise2/wise2.4.1/src/models/standardout.c	file
wise2/wise2.4.1/src/models/standardout.dy	file
wise2/wise2.4.1/src/models/standardout.h	file
wise2/wise2.4.1/src/models/statwise.c	file
wise2/wise2.4.1/src/models/statwise10.c	file
wise2/wise2.4.1/src/models/sw_wrap.c	file
wise2/wise2.4.1/src/models/sw_wrap.dy	file
wise2/wise2.4.1/src/models/sw_wrap.h	file
wise2/wise2.4.1/src/models/sw_wrap.pod	file
wise2/wise2.4.1/src/models/sw_wrap.tex	file
wise2/wise2.4.1/src/models/sw_wrap.typemap	file
wise2/wise2.4.1/src/models/sw_wrap.xs	file
wise2/wise2.4.1/src/models/sw_wrap_api.h	file
wise2/wise2.4.1/src/models/sw_wrap_api.t	file
wise2/wise2.4.1/src/models/syexonmodel.c	file
wise2/wise2.4.1/src/models/syexonmodel.dy	file
wise2/wise2.4.1/src/models/syexonmodel.h	file
wise2/wise2.4.1/src/models/sywise.c	file
wise2/wise2.4.1/src/models/sywise20.c	file
wise2/wise2.4.1/src/models/sywise20.dy	file
wise2/wise2.4.1/src/models/sywise20.h	file
wise2/wise2.4.1/src/models/test_aligng.c	file
wise2/wise2.4.1/src/models/test_gwhsp.c	file
wise2/wise2.4.1/src/models/test_splice.c	file
wise2/wise2.4.1/src/models/testdna.c	file
wise2/wise2.4.1/src/models/testgenestat.c	file
wise2/wise2.4.1/src/models/threestatedb.c	file
wise2/wise2.4.1/src/models/threestatedb.dy	file
wise2/wise2.4.1/src/models/threestatedb.h	file
wise2/wise2.4.1/src/models/threestatedb.pod	file
wise2/wise2.4.1/src/models/threestatedb.tex	file
wise2/wise2.4.1/src/models/threestatedb.typemap	file
wise2/wise2.4.1/src/models/threestatedb.xs	file
wise2/wise2.4.1/src/models/threestatedb_api.h	file
wise2/wise2.4.1/src/models/threestatedb_api.t	file
wise2/wise2.4.1/src/models/threestatedp.c	file
wise2/wise2.4.1/src/models/threestatedp.dy	file
wise2/wise2.4.1/src/models/threestatedp.h	file
wise2/wise2.4.1/src/models/threestateloop.c	file
wise2/wise2.4.1/src/models/threestateloop.dy	file
wise2/wise2.4.1/src/models/threestateloop.h	file
wise2/wise2.4.1/src/models/threestatemodel.c	file
wise2/wise2.4.1/src/models/threestatemodel.dy	file
wise2/wise2.4.1/src/models/threestatemodel.h	file
wise2/wise2.4.1/src/models/threestatemodel.pod	file
wise2/wise2.4.1/src/models/threestatemodel.tex	file
wise2/wise2.4.1/src/models/threestatemodel.typemap	file
wise2/wise2.4.1/src/models/threestatemodel.xs	file
wise2/wise2.4.1/src/models/threestatemodel_api.h	file
wise2/wise2.4.1/src/models/threestatemodel_api.t	file
wise2/wise2.4.1/src/models/transfactor.c	file
wise2/wise2.4.1/src/models/transfactor.dy	file
wise2/wise2.4.1/src/models/transfactor.h	file
wise2/wise2.4.1/src/models/transregion.c	file
wise2/wise2.4.1/src/models/transregion.dy	file
wise2/wise2.4.1/src/models/transregion.h	file
wise2/wise2.4.1/src/models/transregiondp.c	file
wise2/wise2.4.1/src/models/transregiondp.dy	file
wise2/wise2.4.1/src/models/transregiondp.h	file
wise2/wise2.4.1/src/models/version.h	file
wise2/wise2.4.1/src/models/wise2xhmmer2.c	file
wise2/wise2.4.1/src/models/wise2xhmmer2.dy	file
wise2/wise2.4.1/src/models/wise2xhmmer2.h	file
wise2/wise2.4.1/src/network	directory
wise2/wise2.4.1/src/network/client_multihspscan.c	file
wise2/wise2.4.1/src/network/client_multihspscan.dy	file
wise2/wise2.4.1/src/network/client_multihspscan.h	file
wise2/wise2.4.1/src/network/makefile	file
wise2/wise2.4.1/src/network/net_hspscan.c	file
wise2/wise2.4.1/src/network/net_hspscan.dy	file
wise2/wise2.4.1/src/network/net_hspscan.h	file
wise2/wise2.4.1/src/network/README	file
wise2/wise2.4.1/src/network/wise_proteinindex_server.c	file
wise2/wise2.4.1/src/other_programs	directory
wise2/wise2.4.1/src/other_programs/makefile	file
wise2/wise2.4.1/src/other_programs/orthoset.dy	file
wise2/wise2.4.1/src/other_programs/test_ortho.c	file
wise2/wise2.4.1/src/perl	directory
wise2/wise2.4.1/src/perl/basic.h	file
wise2/wise2.4.1/src/perl/basic.typemap	file
wise2/wise2.4.1/src/perl/Makefile	file
wise2/wise2.4.1/src/perl/makelib.pl	file
wise2/wise2.4.1/src/perl/top.xs	file
wise2/wise2.4.1/src/perl/scripts	directory
wise2/wise2.4.1/src/perl/scripts/blastwise.pl	file
wise2/wise2.4.1/src/perl/scripts/estwise.pl	file
wise2/wise2.4.1/src/perl/scripts/genewise.pl	file
wise2/wise2.4.1/src/perl/scripts/halfwise.pl	file
wise2/wise2.4.1/src/perl/scripts/postwise.pl	file
wise2/wise2.4.1/src/perl/scripts/protestwise.pl	file
wise2/wise2.4.1/src/perl/scripts/README	file
wise2/wise2.4.1/src/perl/Wise2	directory
wise2/wise2.4.1/src/perl/Wise2/blosum62.bla	file
wise2/wise2.4.1/src/perl/Wise2/Makefile.PL	file
wise2/wise2.4.1/src/perl/Wise2/test.pl	file
wise2/wise2.4.1/src/perl/Wise2/Wise2.pm	file
wise2/wise2.4.1/src/perl/Wise2/libs	directory
wise2/wise2.4.1/src/perl/Wise2/libs/README	file
wise2/wise2.4.1/src/snp	directory
wise2/wise2.4.1/src/snp/frequency_count.dy	file
wise2/wise2.4.1/src/snp/genotype.dy	file
wise2/wise2.4.1/src/snp/locus_framework.dy	file
wise2/wise2.4.1/src/snp/locus_model_estimators.dy	file
wise2/wise2.4.1/src/snp/makefile	file
wise2/wise2.4.1/src/snp/person.dy	file
wise2/wise2.4.1/src/snp/test_est.c	file
wise2/wise2.4.1/src/socket	directory
wise2/wise2.4.1/src/socket/anonobj.c	file
wise2/wise2.4.1/src/socket/anonobj.dy	file
wise2/wise2.4.1/src/socket/anonobj.h	file
wise2/wise2.4.1/src/socket/directsocketwrite.c	file
wise2/wise2.4.1/src/socket/directsocketwrite.dy	file
wise2/wise2.4.1/src/socket/directsocketwrite.h	file
wise2/wise2.4.1/src/socket/functionclient.c	file
wise2/wise2.4.1/src/socket/functionclient.dy	file
wise2/wise2.4.1/src/socket/functionclient.h	file
wise2/wise2.4.1/src/socket/functionserver.c	file
wise2/wise2.4.1/src/socket/functionserver.dy	file
wise2/wise2.4.1/src/socket/functionserver.h	file
wise2/wise2.4.1/src/socket/makefile	file
wise2/wise2.4.1/src/socket/simplebufferedserver.c	file
wise2/wise2.4.1/src/socket/simplebufferedserver.dy	file
wise2/wise2.4.1/src/socket/simplebufferedserver.h	file
wise2/wise2.4.1/src/socket/simplesocketclient.c	file
wise2/wise2.4.1/src/socket/simplesocketclient.dy	file
wise2/wise2.4.1/src/socket/simplesocketclient.h	file
wise2/wise2.4.1/src/socket/transferinterface.c	file
wise2/wise2.4.1/src/socket/transferinterface.dy	file
wise2/wise2.4.1/src/socket/transferinterface.h	file
wise2/wise2.4.1/src/test	directory
wise2/wise2.4.1/src/test/basic_cdna.out	file
wise2/wise2.4.1/src/test/basic_dna.out	file
wise2/wise2.4.1/src/test/basic_genomic.out	file
wise2/wise2.4.1/src/test/dna.db	file
wise2/wise2.4.1/src/test/estwise-db.out	file
wise2/wise2.4.1/src/test/genewise-db-lite.out	file
wise2/wise2.4.1/src/test/genewise-db.out	file
wise2/wise2.4.1/src/test/genewisedb-pfam.out	file
wise2/wise2.4.1/src/test/go.evi	file
wise2/wise2.4.1/src/test/go.out	file
wise2/wise2.4.1/src/test/HMM.ascii	file
wise2/wise2.4.1/src/test/HMM.binary	file
wise2/wise2.4.1/src/test/hmm_cdna.out	file
wise2/wise2.4.1/src/test/hmm_genomic.out	file
wise2/wise2.4.1/src/test/human.genomic	file
wise2/wise2.4.1/src/test/pep.fa	file
wise2/wise2.4.1/src/test/promoterwise.out	file
wise2/wise2.4.1/src/test/pswdb.out	file
wise2/wise2.4.1/src/test/pw.human	file
wise2/wise2.4.1/src/test/pw.mouse	file
wise2/wise2.4.1/src/test/road.pep	file
wise2/wise2.4.1/src/test/rrm.HMM	file
wise2/wise2.4.1/src/test/scanwisep.out	file
wise2/wise2.4.1/src/test/short.dna	file
wise2/wise2.4.1/src/test/short.pep	file
wise2/wise2.4.1/src/test/short.test	file
wise2/wise2.4.1/src/test/testman.pl	file
wise2/wise2.4.1/src/test/wrong.hmm	file
wise2/wise2.4.1/src/test/wrong.out	file
wise2/wise2.4.1/src/test/wrong_est.out	file
wise2/wise2.4.1/test_data	directory
wise2/wise2.4.1/test_data/alignwise.gen	file
wise2/wise2.4.1/test_data/db.hmm	file
wise2/wise2.4.1/test_data/dummy_hox.dna	file
wise2/wise2.4.1/test_data/epo.genomic	file
wise2/wise2.4.1/test_data/epo.pep	file
wise2/wise2.4.1/test_data/fugu.gen	file
wise2/wise2.4.1/test_data/fugu_human.pep	file
wise2/wise2.4.1/test_data/hn_est.fa	file
wise2/wise2.4.1/test_data/HOX.HMM	file
wise2/wise2.4.1/test_data/human.genomic	file
wise2/wise2.4.1/test_data/jason.dna	file
wise2/wise2.4.1/test_data/jason.pep	file
wise2/wise2.4.1/test_data/keratin_intron.human	file
wise2/wise2.4.1/test_data/keratin_intron.mouse	file
wise2/wise2.4.1/test_data/pep.fa	file
wise2/wise2.4.1/test_data/phased_roa1.pep	file
wise2/wise2.4.1/test_data/Q8NAN2.dna	file
wise2/wise2.4.1/test_data/Q8NAN2.pep	file
wise2/wise2.4.1/test_data/README	file
wise2/wise2.4.1/test_data/road.pep	file
wise2/wise2.4.1/test_data/rpo_fugu.gen	file
wise2/wise2.4.1/test_data/rpo_h_f.anchor	file
wise2/wise2.4.1/test_data/rpo_h_m.anchor	file
wise2/wise2.4.1/test_data/rpo_h_r.anchor	file
wise2/wise2.4.1/test_data/rpo_human.gen	file
wise2/wise2.4.1/test_data/rpo_human.intron	file
wise2/wise2.4.1/test_data/rpo_human.pep	file
wise2/wise2.4.1/test_data/rpo_mouse.gen	file
wise2/wise2.4.1/test_data/rpo_rat.gen	file
wise2/wise2.4.1/test_data/rrm.HMM	file
wise2/wise2.4.1/test_data/rua1.pep	file
wise2/wise2.4.1/test_data/vav.dna	file
wise2/wise2.4.1/test_data/vav_promoter.human	file
wise2/wise2.4.1/test_data/vav_promoter.mouse	file
wise2/wise2.4.1/test_data/xeno.cdna	file
wise2/wise2.4.1/test_data/xeno.pep	file
wise2/wise2.4.1/wisecfg	directory
wise2/wise2.4.1/wisecfg/aa.rnd	file
wise2/wise2.4.1/wisecfg/BLOSUM30.bla	file
wise2/wise2.4.1/wisecfg/BLOSUM45.bla	file
wise2/wise2.4.1/wisecfg/BLOSUM62.bla	file
wise2/wise2.4.1/wisecfg/BLOSUM80.bla	file
wise2/wise2.4.1/wisecfg/cb.tmf	file
wise2/wise2.4.1/wisecfg/codon.martian	file
wise2/wise2.4.1/wisecfg/codon.table	file
wise2/wise2.4.1/wisecfg/gene.stat	file
wise2/wise2.4.1/wisecfg/gon120.bla	file
wise2/wise2.4.1/wisecfg/gon160.bla	file
wise2/wise2.4.1/wisecfg/gon200.bla	file
wise2/wise2.4.1/wisecfg/gon250.bla	file
wise2/wise2.4.1/wisecfg/gon350.bla	file
wise2/wise2.4.1/wisecfg/human.gf	file
wise2/wise2.4.1/wisecfg/human.gp	file
wise2/wise2.4.1/wisecfg/human.stats	file
wise2/wise2.4.1/wisecfg/idenity.bla	file
wise2/wise2.4.1/wisecfg/methods	file
wise2/wise2.4.1/wisecfg/pb.gf	file
wise2/wise2.4.1/wisecfg/pombe.gf	file
wise2/wise2.4.1/wisecfg/tm.pri	file
wise2/wise2.4.1/wisecfg/wag55	file
wise2/wise2.4.1/wisecfg/wag65	file
wise2/wise2.4.1/wisecfg/wag75	file
wise2/wise2.4.1/wisecfg/wag85	file
wise2/wise2.4.1/wisecfg/wise.2	file
wise2/wise2.4.1/wisecfg/wise.per	file
wise2/wise2.4.1/wisecfg/worm.gf	file

Holders

path	holder	start	end

Authors

path	Author	start	end

Emails

path	email	start	end

Urls

path	url	start	end

License References

key	short_name	category	owner	scancode_url	licensedb_url	homepage_url	text_urls	spdx_license_key	spdx_url
ace-tao	ACE TAO License	Permissive	Douglas Schmidt	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/ace-tao.LICENSE	https://scancode-licensedb.aboutcode.org/ace-tao	http://www.cs.wustl.edu/~schmidt/	http://www.cs.wustl.edu/~schmidt/ACE-copying.html	DOC	https://spdx.org/licenses/DOC
agpl-3.0-plus	AGPL 3.0 or later	Copyleft	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/agpl-3.0-plus.LICENSE	https://scancode-licensedb.aboutcode.org/agpl-3.0-plus	http://www.gnu.org/licenses/agpl-3.0.html	http://www.gnu.org/licenses/agpl.txt	AGPL-3.0-or-later	https://spdx.org/licenses/AGPL-3.0-or-later
bsd-new	BSD-3-Clause	Permissive	Regents of the University of California	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/bsd-new.LICENSE	https://scancode-licensedb.aboutcode.org/bsd-new	http://www.opensource.org/licenses/BSD-3-Clause	http://www.opensource.org/licenses/BSD-3-Clause	BSD-3-Clause	https://spdx.org/licenses/BSD-3-Clause
bsd-simplified	BSD-2-Clause	Permissive	Regents of the University of California	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/bsd-simplified.LICENSE	https://scancode-licensedb.aboutcode.org/bsd-simplified	http://www.opensource.org/licenses/BSD-2-Clause	http://opensource.org/licenses/bsd-license.php	BSD-2-Clause	https://spdx.org/licenses/BSD-2-Clause
gpl-1.0-plus	GPL 1.0 or later	Copyleft	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/gpl-1.0-plus.LICENSE	https://scancode-licensedb.aboutcode.org/gpl-1.0-plus	http://www.gnu.org/licenses/old-licenses/gpl-1.0-standalone.html	http://www.gnu.org/licenses/old-licenses/gpl-1.0-standalone.html	GPL-1.0-or-later	https://spdx.org/licenses/GPL-1.0-or-later
gpl-2.0	GPL 2.0	Copyleft	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/gpl-2.0.LICENSE	https://scancode-licensedb.aboutcode.org/gpl-2.0	http://www.gnu.org/licenses/gpl-2.0.html	http://www.gnu.org/licenses/gpl-2.0.txt http://www.gnu.org/licenses/old-licenses/gpl-2.0.txt	GPL-2.0-only	https://spdx.org/licenses/GPL-2.0-only
gpl-2.0-plus	GPL 2.0 or later	Copyleft	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/gpl-2.0-plus.LICENSE	https://scancode-licensedb.aboutcode.org/gpl-2.0-plus	http://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html	http://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html	GPL-2.0-or-later	https://spdx.org/licenses/GPL-2.0-or-later
gpl-3.0	GPL 3.0	Copyleft	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/gpl-3.0.LICENSE	https://scancode-licensedb.aboutcode.org/gpl-3.0	http://www.gnu.org/licenses/gpl-3.0.html	http://www.gnu.org/licenses/gpl-3.0-standalone.html http://www.gnu.org/licenses/gpl-3.0.txt	GPL-3.0-only	https://spdx.org/licenses/GPL-3.0-only
gpl-3.0-plus	GPL 3.0 or later	Copyleft	Free Software Foundation (FSF)	https://github.com/nexB/scancode-toolkit/tree/develop/src/licensedcode/data/licenses/gpl-3.0-plus.LICENSE	https://scancode-licensedb.aboutcode.org/gpl-3.0-plus	http://www.gnu.org/licenses/gpl-3.0-standalone.html	http://www.gnu.org/licenses/gpl-3.0-standalone.html	GPL-3.0-or-later	https://spdx.org/licenses/GPL-3.0-or-later
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